Richa Agarwala

According to our database, Richa Agarwala authored at least 21 papers between 1992 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

SAUTE: sequence assembly using target enrichment.

Alexandre Souvorov, Richa Agarwala

BMC Bioinform., 2021

2019

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell

Nucleic Acids Res., 2019

2010

High-throughput sequencing of the DBA/2J mouse genome.

Xusheng Wang, Richa Agarwala, John A. Capra, Zugen Chen, Deanna M. Church, Daniel C. Ciobanu, Zhengsheng Li, Lu Lu, Khyobeni Mozhui, Megan K. Mulligan, Stanley F. Nelson, Katherine S. Pollard, William Taylor, Donald B. Thomason, Robert W. Williams

BMC Bioinform., 2010

2009

The National Center for Biotechnology Information's Protein Clusters Database.

William Klimke, Richa Agarwala, Azat Badretdin, Slava Chetvernin, Stacy Ciufo, Boris Fedorov, Boris Kiryutin, Kathleen O'Neill, Wolfgang Resch, Sergei Resenchuk, Susan Schafer, Igor Tolstoy, Tatiana A. Tatusova

Nucleic Acids Res., 2009

2008

Database indexing for production MegaBLAST searches.

Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer

Bioinform., 2008

2007

Improved BLAST searches using longer words for protein seeding.

Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schäffer, Richa Agarwala

Bioinform., 2007

rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control.

Alejandro A. Schäffer, Edward Stallknecht Rice, William J. Cook, Richa Agarwala

Bioinform., 2007

COBALT: constraint-based alignment tool for multiple protein sequences.

Jason S. Papadopoulos, Richa Agarwala

Bioinform., 2007

2006

A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences.

Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala

J. Comput. Biol., 2006

WindowMasker: window-based masker for sequenced genomes.

Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala

Bioinform., 2006

2000

Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations.

Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer

Discret. Appl. Math., 2000

1999

On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics).

Richa Agarwala, Vineet Bafna, Martin Farach, Mike Paterson, Mikkel Thorup

SIAM J. Comput., 1999

1997

Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.

Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena

J. Comput. Biol., 1997

Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model.

Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena

Proceedings of the Eighth Annual ACM-SIAM Symposium on Discrete Algorithms, 1997

1996

Weighted Multidimensional Search and Its Application to Convex Optimization.

Richa Agarwala, David Fernández-Baca

SIAM J. Comput., 1996

Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs.

Richa Agarwala, David Fernández-Baca

Int. J. Found. Comput. Sci., 1996

On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics).

Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup

Proceedings of the Seventh Annual ACM-SIAM Symposium on Discrete Algorithms, 1996

1995

Fast Algorithms for Inferring Evolutionary Trees.

Richa Agarwala, David Fernández-Baca, Giora Slutzki

J. Comput. Biol., 1995

Weighted Search in the Plane.

Richa Agarwala, David Fernández-Baca

Inf. Process. Lett., 1995

1994

A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed.

Richa Agarwala, David Fernández-Baca

SIAM J. Comput., 1994

1992

Solving the Lagrangian Dual when the Number of Constraints is Fixed.

Richa Agarwala, David Fernández-Baca

Proceedings of the Foundations of Software Technology and Theoretical Computer Science, 1992