Rengül Çetin-Atalay

Orcid: 0000-0003-2408-6606

Affiliations:
  • Bilkent University, Ankara, Turkey


According to our database1, Rengül Çetin-Atalay authored at least 43 papers between 2002 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
An integrative framework for clinical diagnosis and knowledge discovery from exome sequencing data.
Comput. Biol. Medicine, February, 2024

2023
Human Hepatocellular Carcinoma Classification from H&E Stained Histopathology Images with 3D Convolutional Neural Networks and Focal Loss Function.
J. Imaging, 2023

Transfer learning for drug-target interaction prediction.
Bioinform., 2023

2022
SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.
Bioinform., 2022

2021
Protein domain-based prediction of drug/compound-target interactions and experimental validation on LIM kinases.
PLoS Comput. Biol., 2021

MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.
Bioinform., 2021

2020
<i>DeepDistance</i>: A multi-task deep regression model for cell detection in inverted microscopy images.
Medical Image Anal., 2020

iBioProVis: interactive visualization and analysis of compound bioactivity space.
Bioinform., 2020

iBioProVis: interactive visualization and analysis of compound bioactivity space.
Bioinform., 2020

2019
A visual object tracking benchmark for cell motility in time-lapse imaging.
Signal Image Video Process., 2019

DeepDistance: A Multi-task Deep Regression Model for Cell Detection in Inverted Microscopy Images.
CoRR, 2019

Synthesis, anticancer activity, toxicity evaluation and molecular docking studies of novel phenylaminopyrimidine - (thio)urea hybrids as potential kinase inhibitors.
Comput. Biol. Chem., 2019

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.
Briefings Bioinform., 2019

2018
EClerize: A customized force-directed graph drawing algorithm for biological graphs with EC attributes.
J. Bioinform. Comput. Biol., 2018

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature.
BMC Bioinform., 2018

Contrast Enhancement of Microscopy Images Using Image Phase Information.
IEEE Access, 2018

2017
Automated cancer stem cell recognition in H and E stained tissue using convolutional neural networks and color deconvolution.
Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

Classification of Hematoxylin and Eosin Images Using Local Binary Patterns and 1-D SIFT Algorithm.
Proceedings of the IWCIM 2017, 2017

2016
Phase and TV Based Convex Sets for Blind Deconvolution of Microscopic Images.
IEEE J. Sel. Top. Signal Process., 2016

Mixture of learners for cancer stem cell detection using CD13 and H and E stained images.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

Classification of human carcinoma cells using multispectral imagery.
Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

2015
Wavelet merged multi-resolution super-pixels and their applications on fluorescent MSC images.
Proceedings of the 2015 23nd Signal Processing and Communications Applications Conference (SIU), 2015

Multiplication-free Neural Networks.
Proceedings of the 2015 23nd Signal Processing and Communications Applications Conference (SIU), 2015

Detection of Cancer Stem Cells in microscopic images by using region covariance and codifference method.
Proceedings of the 2015 International Workshop on Computational Intelligence for Multimedia Understanding, 2015

Multi-resolution super-pixels and their applications on fluorescent mesenchymal stem cells images using 1-D SIFT merging.
Proceedings of the 2015 IEEE International Conference on Image Processing, 2015

2014
A supervised learning model for live cell segmentation.
Proceedings of the 2014 22nd Signal Processing and Communications Applications Conference (SIU), 2014

Discriminative Modeling of Cell Signaling as Bayesian Networks.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

Applications of p53 interactome analysis to personalised drug discovery.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

2013
Attributed Relational Graphs for Cell Nucleus Segmentation in Fluorescence Microscopy Images.
IEEE Trans. Medical Imaging, 2013

A multiplication-free framework for signal processing and applications in biomedical image analysis.
Proceedings of the IEEE International Conference on Acoustics, 2013

2012
Microscopic image classification via ℂWT-based covariance descriptors using Kullback-Leibler distance.
Proceedings of the 2012 IEEE International Symposium on Circuits and Systems, 2012

Carcinoma cell line discrimination in microscopic images using unbalanced wavelets.
Proceedings of the 46th Annual Conference on Information Sciences and Systems, 2012

2011
G-Network Modelling Based Abnormal Pathway Detection in Gene Regulatory Networks.
Proceedings of the Computer and Information Sciences II, 2011

Microscopic image classification using sparsity in a transform domain and Bayesian learning.
Proceedings of the 19th European Signal Processing Conference, 2011

2010
Evaluation of Signaling Cascades Based on the Weights from Microarray and ChIP-seq Data.
Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010

Bi-k-bi clustering: mining large scale gene expression data using two-level biclustering.
Int. J. Data Min. Bioinform., 2010

Data and Model Driven Hybrid Approach to Activity Scoring of Cyclic Pathways.
Proceedings of the Computer and Information Sciences, 2010

2008
Subsequence-based feature map for protein function classification.
Comput. Biol. Chem., 2008

2005
Implicit motif distribution based hybrid computational kernel for sequence classification.
Bioinform., 2005

2004
An ontology for collaborative construction and analysis of cellular pathways.
Bioinform., 2004

2003
Prediction of Protein Subcellular Localization Based on Primary Sequence Data.
Proceedings of the Computer and Information Sciences, 2003

Application of Data Mining Techniques to Protein-Protein Interaction Prediction.
Proceedings of the Computer and Information Sciences, 2003

2002
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways.
Bioinform., 2002


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