René Werner

Orcid: 0000-0002-2296-3305

According to our database1, René Werner authored at least 78 papers between 2006 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2024
Deep Image Prior for Spatio-temporal Fluorescence Microscopy Images DECO-DIP.
Proceedings of the Bildverarbeitung für die Medizin 2024, 2024

2023
Surgical tool classification and localization: results and methods from the MICCAI 2022 SurgToolLoc challenge.
CoRR, 2023

Self-supervision for medical image classification: state-of-the-art performance with ~100 labeled training samples per class.
CoRR, 2023

Extending Tempcyclegan for Virtual Augmentation of Gastrointestinal Endoscopy Training Simulators.
Proceedings of the Bildverarbeitung für die Medizin 2023, 2023

Label Efficient Classification in Liquid Biopsy Data by Self-supervision.
Proceedings of the Bildverarbeitung für die Medizin 2023, 2023

2022
Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images.
CoRR, 2022

Reinforcement learning-basierte Patchpriorisierung zur beschleunigten Segmentierung von hochauflösenden Endoskopievideodaten.
Proceedings of the Bildverarbeitung für die Medizin 2022, 2022

2021
Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture.
Medical Image Anal., 2021

Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy.
Frontiers Neuroinformatics, 2021

Abstract: Time Matters - Handling Spatio-temporal Perfusion Information for Automated Treatment in Cerebral Ischemia Scoring.
Proceedings of the Bildverarbeitung für die Medizin 2021, 2021

Abstract: Widening the Focus - Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies.
Proceedings of the Bildverarbeitung für die Medizin 2021, 2021

Abstract: Reduktion der Kalibrierungszeit für die Magnetpartikelbildgebung mittels Deep Learning.
Proceedings of the Bildverarbeitung für die Medizin 2021, 2021

2020
Skin Lesion Classification Using CNNs With Patch-Based Attention and Diagnosis-Guided Loss Weighting.
IEEE Trans. Biomed. Eng., 2020

Time Matters: Handling Spatio-Temporal Perfusion Information for Automated TICI Scoring.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Widening the Focus: Biomedical Image Segmentation Challenges and the Underestimated Role of Patch Sampling and Inference Strategies.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

3d-SMRnet: Achieving a New Quality of MPI System Matrix Recovery by Deep Learning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Reservoir Computing for Jurkat T-cell Segmentation in High Resolution Live Cell Ca<sup>2</sup>+ Fluorescence Microscopy.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019
Skin Lesion Classification Using Ensembles of Multi-Resolution EfficientNets with Meta Data.
CoRR, 2019

Multi-scale fully convolutional neural networks for histopathology image segmentation: from nuclear aberrations to the global tissue architecture.
CoRR, 2019

Self-consistent deep learning-based boosting of 4D cone-beam computed tomography reconstruction.
Proceedings of the Medical Imaging 2019: Image Processing, 2019

Patient-specific 4D Monte Carlo dose accumulation using correspondence-model-based motion prediction.
Proceedings of the Medical Imaging 2019: Image-Guided Procedures, 2019

Toward employing the full potential of magnetic particle imaging: exploring visualization techniques and clinical use cases for real-time 3D vascular imaging.
Proceedings of the Medical Imaging 2019: Biomedical Applications in Molecular, 2019

Machbarkeitsstudie zur CNN-basierten Identifikation und TICI-Klassifizierung zerebraler ischämischer Infarkte in DSA-Daten.
Proceedings of the Bildverarbeitung für die Medizin 2019 - Algorithmen - Systeme, 2019

2018
Skin Lesion Diagnosis using Ensembles, Unscaled Multi-Crop Evaluation and Loss Weighting.
CoRR, 2018

Self-reference-based and during-registration detection of motion artifacts in spatio-temporal image data.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Influence of 4D CT motion artifacts on correspondence model-based 4D dose accumulation.
Proceedings of the Medical Imaging 2018: Image-Guided Procedures, 2018

GDL-FIRE ^\text 4D : Deep Learning-Based Fast 4D CT Image Registration.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Combining Good Old Random Forest and DeepLabv3+ for ISLES 2018 CT-Based Stroke Segmentation.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2018

Einfluss nicht-rigider Bildregistrierung auf 4D-Dosissimulation bei extrakranieller SBRT.
Proceedings of the Bildverarbeitung für die Medizin 2018 - Algorithmen - Systeme, 2018

2017
Low Rank and Sparse Matrix Decomposition as Stroke Segmentation Prior: Useful or Not? A Random Forest-Based Evaluation Study.
Proceedings of the Bildverarbeitung für die Medizin 2017 - Algorithmen - Systeme, 2017

Defining Restrictions and Limits of Registration-Based Quantification of Geometric Deformation in Cerebral Blood Vessels.
Proceedings of the Bildverarbeitung für die Medizin 2017 - Algorithmen - Systeme, 2017

Systematic Analysis of Jurkat T-Cell Deformation in Fluorescence Microscopy Data.
Proceedings of the Bildverarbeitung für die Medizin 2017 - Algorithmen - Systeme, 2017

2016
Beyond cost function masking: RPCA-based non-linear registration in the context of VLSM.
Proceedings of the International Workshop on Pattern Recognition in Neuroimaging, 2016

Phantom-based ground-truth generation for cerebral vessel segmentation and pulsatile deformation analysis.
Proceedings of the Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, San Diego, California, United States, 27 February, 2016

Geometrieplanung und Bildregistrierung mittels bimodaler Fiducial-Marker für Magnetic Particle Imaging.
Proceedings of the Bildverarbeitung für die Medizin 2016 - Algorithmen - Systeme, 2016

2015
Reference geometry-based detection of (4D-)CT motion artifacts: a feasibility study.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

A Modular Framework for Post-Processing and Analysis of Fluorescence Microscopy Image Sequences of Subcellular Calcium Dynamics.
Proceedings of the Bildverarbeitung für die Medizin 2015, Algorithmen - Systeme, 2015

Variational Registration.
Proceedings of the Bildverarbeitung für die Medizin 2015, Algorithmen - Systeme, 2015

2014
Simulation of spatiotemporal CT data sets using a 4D MRI-based lung motion model.
Int. J. Comput. Assist. Radiol. Surg., 2014

Statistical analysis of surrogate signals to incorporate respiratory motion variability into radiotherapy treatment planning.
Proceedings of the Medical Imaging 2014: Image-Guided Procedures, 2014

Kombination von Atemsignalen zur Optimierung der Prädiktion komplexer atmungsbedingter Organ- und Tumorbewegungen.
Proceedings of the Bildverarbeitung für die Medizin 2014, Algorithmen - Systeme, 2014

2013
TV-L1-Based 3D Medical Image Registration with the Census Cost Function.
Proceedings of the Image and Video Technology - 6th Pacific-Rim Symposium, 2013

High Accuracy Optical Flow for 3D Medical Image Registration Using the Census Cost Function.
Proceedings of the Image and Video Technology - 6th Pacific-Rim Symposium, 2013

Surrogate-based diffeomorphic motion estimation for radiation therapy: comparison of multivariate regression approaches.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Assessing accuracy of non-linear registration in 4D image data using automatically detected landmark correspondences.
Proceedings of the Medical Imaging 2013: Image Processing, 2013

Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT.
Proceedings of the Machine Learning in Medical Imaging - 4th International Workshop, 2013

4D-MRT-basierte Simulation der Lungenbewegung in statischen CT-Daten.
Proceedings of the Bildverarbeitung für die Medizin 2013 - Algorithmen - Systeme, 2013

Simulation und Evaluation tiefenbildgebender Verfahren zur Prädiktion atmungsbedingter Organ- und Tumorbewegungen.
Proceedings of the Bildverarbeitung für die Medizin 2013 - Algorithmen - Systeme, 2013

2012
Bewegungsfeldschätzung und Dosisakkumulation anhand von 4D-Bilddaten für die Strahlentherapie atmungsbewegter Tumoren.
PhD thesis, 2012

Estimation of slipping organ motion by registration with direction-dependent regularization.
Medical Image Anal., 2012

Fast Explicit Diffusion for Registration with Direction-Dependent Regularization.
Proceedings of the Biomedical Image Registration - 5th International Workshop, 2012

Pulmonary lobe segmentation with level sets.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Model-based risk assessment for motion effects in 3D radiotherapy of lung tumors.
Proceedings of the Medical Imaging 2012: Image-Guided Procedures, 2012

Computer-Aided Detection of Aneurysms in 3D Time-of-Flight MRA Datasets.
Proceedings of the Machine Learning in Medical Imaging - Third International Workshop, 2012

Lung Registration with Improved Fissure Alignment by Integration of Pulmonary Lobe Segmentation.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

A Diffeomorphic Framework for Surrogate-based Motion Estimation in Radiation Therapy: Concept and First Evaluation.
Proceedings of the 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft für Informatik, Was bewegt uns in der/die Zukunft?, 2012

Automatische Detektion von Aneurysmen in 3D Time-of-Flight Magnetresonanzangiographie Datensätzen.
Proceedings of the 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft für Informatik, Was bewegt uns in der/die Zukunft?, 2012

Evaluation von Differentialoperatoren zur Detektion anatomischer Landmarken in thorakalen und abdominalen tomographischen Bilddaten.
Proceedings of the 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft für Informatik, Was bewegt uns in der/die Zukunft?, 2012

Evaluation of Algorithms for Lung Fissure Segmentation in CT Images.
Proceedings of the Bildverarbeitung für die Medizin 2012 - Algorithmen - Systeme, 2012

2011
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.
IEEE Trans. Medical Imaging, 2011

Statistical Modeling of 4D Respiratory Lung Motion Using Diffeomorphic Image Registration.
IEEE Trans. Medical Imaging, 2011

Landmark-driven parameter optimization for non-linear image registration.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Optimierung nicht-linearer Registrierung durch automatisch detektierte Landmarken.
Proceedings of the Bildverarbeitung für die Medizin 2011: Algorithmen - Systeme, 2011

2010
Estimation of motion fields by non-linear registration for local lung motion analysis in 4D CT image data.
Int. J. Comput. Assist. Radiol. Surg., 2010

Direction-dependent regularization for improved estimation of liver and lung motion in 4D image data.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

A statistical shape and motion model for the prediction of respiratory lung motion.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Automatische Landmarkendetektion und -übertragung zur Evaluation der Registrierung von thorakalen CT-Daten.
Proceedings of the Bildverarbeitung für die Medizin 2010 - Algorithmen - Systeme, 2010

2009
Validation and comparison of a biophysical modeling approach and non-linear registration for estimation of lung motion fields in thoracic 4D CT data.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Slipping Objects in Image Registration: Improved Motion Field Estimation with Direction-Dependent Regularization.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Estimation of Inner Lung Motion Fields by Non-linear Registration.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

Integrierte Segmentierung und Trajektorienberechnung mittels diffeomorpher Registrierung in räumlich-zeitlichen CT-Bildfolgen.
Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

2008
Generation of a Mean Motion Model of the Lung Using 4D-CT Image Data.
Proceedings of the Eurographics Workshop on Visual Computing for Biomedicine, 2008

Finite-Element-Modellierung von respiratorischen Lungenbewegungen als elastizitätstheoretisches Kontaktproblem zur Bewegungsschätzung in 4D-CT-Daten.
Proceedings of the Bildverarbeitung für die Medizin 2008, 2008

2007
4D medical image computing and visualization of lung tumor mobility in spatio-temporal CT image data.
Int. J. Medical Informatics, 2007

Analysis of free breathing motion using artifact reduced 4D CT image data.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

2006
Reconstruction of 4D-CT data sets acquired during free breathing for the analysis of respiratory motion.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Generation of 4D CT Image Data and Analysis of Lung Tumour Mobility during the Breathing Cycle.
Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006

Rekonstruktion von 4D-CT-Daten aus räumlich-zeitlichen CT-Segmentfolgen zur Analyse atmungsbedingter Organbewegungen.
Proceedings of the Bildverarbeitung für die Medizin 2006, Algorithmen, Systeme, Anwendungen, Proceedings des Workshops vom 19., 2006


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