Réka Albert

According to our database, Réka Albert authored at least 45 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Inferring gene regulatory networks using transcriptional profiles as dynamical attractors.

Ruihao Li, Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne S. Sindi, Clarissa J. Nobile, Réka Albert, Aaron D. Hernday

PLoS Comput. Biol., 2023

2022

Whole community invasions and the integration of novel ecosystems.

Colin Campbell, Laura Russo, Réka Albert, Angus Buckling, Katriona Shea

PLoS Comput. Biol., 2022

pystablemotifs: Python library for attractor identification and control in Boolean networks.

Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, Jorge Gómez Tejeda Zañudo, Réka Albert

Bioinform., 2022

2021

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies.

David J. Wooten, Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari-Bagtzoglou, Reinhard C. Laubenbacher, Clarissa J. Nobile, Réka Albert

PLoS Comput. Biol., 2021

synergy: a Python library for calculating, analyzing and visualizing drug combination synergy.

David J. Wooten, Réka Albert

Bioinform., 2021

2020

Introduction to the Special Section on Network Science in Biological and Bio-Inspired Systems.

Gang Yan, Alex Arenas, Réka Albert

IEEE Trans. Netw. Sci. Eng., 2020

Network model and analysis of the spread of Covid-19 with social distancing.

Parul Maheshwari, Réka Albert

Appl. Netw. Sci., 2020

2019

A survey of some tensor analysis techniques for biological systems.

Farzane Yahyanejad, Réka Albert, Bhaskar DasGupta

Quant. Biol., 2019

Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers.

David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta

PLoS Comput. Biol., 2019

Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling.

Parul Maheshwari, Hao Du, Jen Sheen, Sarah M. Assmann, Réka Albert

PLoS Comput. Biol., 2019

Controlling the cell Cycle restriction Switch across the Information Gradient.

Jordan C. Rozum, Réka Albert

Adv. Complex Syst., 2019

2018

Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks.

Réka Albert, John Baillieul, Adilson E. Motter

IEEE Trans. Control. Netw. Syst., 2018

Identifying (un)controllable dynamical behavior in complex networks.

Jordan C. Rozum, Réka Albert

PLoS Comput. Biol., 2018

2016

Quantification of Regulation in Networks with Positive and Negative Interaction Weights.

Colin Campbell, Réka Albert

Encyclopedia of Algorithms, 2016

Node-independent elementary signaling modes: A measure of redundancy in Boolean signaling transduction networks.

Zhongyao Sun, Réka Albert

Netw. Sci., 2016

Structure-based control of complex networks with nonlinear dynamics.

Jorge G. T. Zañudo, Gang Yang, Réka Albert

CoRR, 2016

Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities.

Colin Campbell, Katriona Shea, Suann Yang, Réka Albert

J. Complex Networks, 2016

Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation.

Xiao Gan, Réka Albert

BMC Syst. Biol., 2016

2015

Cell Fate Reprogramming by Control of Intracellular Network Dynamics.

Jorge G. T. Zañudo, Réka Albert

PLoS Comput. Biol., 2015

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome.

Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran Jr., Jason A. Papin, Réka Albert

PLoS Comput. Biol., 2015

2014

Multi-level Modeling of Light-Induced Stomatal Opening Offers New Insights into Its Regulation by Drought.

Zhongyao Sun, Xiaofen Jin, Réka Albert, Sarah M. Assmann

PLoS Comput. Biol., 2014

Topological implications of negative curvature for biological and social networks.

Réka Albert, Bhaskar DasGupta, Nasim Mobasheri

CoRR, 2014

Stabilization of perturbed Boolean network attractors through compensatory interactions.

Colin Campbell, Réka Albert

BMC Syst. Biol., 2014

2013

A Reduction Method for Boolean Network Models Proven to Conserve Attractors.

Assieh Saadatpour, Réka Albert, Timothy C. Reluga

SIAM J. Appl. Dyn. Syst., 2013

Clustering social networks using ant colony optimization.

Supreet Reddy Mandala, Soundar R. T. Kumara, Calyampudi Radhakrishna Rao, Réka Albert

Oper. Res., 2013

Minimal functional routes in directed graphs with dependent edges.

Rui-Sheng Wang, Zhongyao Sun, Réka Albert

Int. Trans. Oper. Res., 2013

Some Perspectives on Network Modeling in Therapeutic Target Prediction.

Réka Albert, Bhaskar DasGupta, Nasim Mobasheri

CoRR, 2013

2012

Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth.

Juilee Thakar, Ashutosh K. Pathak, Lisa Murphy, Réka Albert, Isabella M. Cattadori

PLoS Comput. Biol., 2012

Networks in Motion

Adilson E. Motter, Réka Albert

CoRR, 2012

2011

Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia.

Assieh Saadatpour, Rui-Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, István Albert, Réka Albert

PLoS Comput. Biol., 2011

A New Computationally Efficient Measure of Topological Redundancy of Biological and Social Networks

Réka Albert, Bhaskar DasGupta, Anthony Gitter, Gamze Gürsoy, Rashmi Hegde, Pradyut Paul, Gowri Sangeetha Sivanathan, Eduardo D. Sontag

CoRR, 2011

Elementary signaling modes predict the essentiality of signal transduction network components.

Rui-Sheng Wang, Réka Albert

BMC Syst. Biol., 2011

2008

Boolean network simulations for life scientists.

István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert

Source Code Biol. Medicine, 2008

NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks.

Sema Kachalo, Ranran Zhang, Eduardo D. Sontag, Réka Albert, Bhaskar DasGupta

Bioinform., 2008

2007

Modeling Systems-Level Regulation of Host Immune Responses.

Juilee Thakar, Mylisa Pilione, Girish Kirimanjeswara, Eric T. Harvill, Réka Albert

PLoS Comput. Biol., 2007

A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence.

Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks

J. Comput. Biol., 2007

Using Graph Concepts to Understand the Organization of Complex Systems.

Claire Christensen, Réka Albert

Int. J. Bifurc. Chaos, 2007

2006

Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs

Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo D. Sontag

Electron. Colloquium Comput. Complex., 2006

Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network.

Wen-Yu Chung, Réka Albert, István Albert, Anton Nekrutenko, Kateryna D. Makova

BMC Bioinform., 2006

Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites.

Anshuman Gupta, Costas D. Maranas, Réka Albert

Bioinform., 2006

Structure and timescale analysis in genetic regulatory networks.

Madalena Chaves, Eduardo D. Sontag, Réka Albert

Proceedings of the 45th IEEE Conference on Decision and Control, 2006

2004

Survivability of Multiagent-Based Supply Networks: A Topological Perspective.

Hari Prasad Thadakamalla, Usha Nandini Raghavan, Soundar R. T. Kumara, Réka Albert

IEEE Intell. Syst., 2004

Conserved network motifs allow protein-protein interaction prediction.

István Albert, Réka Albert

Bioinform., 2004

2001

Statistical mechanics of complex networks

Réka Albert, Albert-László Barabási

CoRR, 2001

1999

The diameter of the world wide web

Réka Albert, Hawoong Jeong, Albert-László Barabási

CoRR, 1999