Ray Luo

Orcid: 0000-0002-6346-8271

Affiliations:
  • University of California Irvine, Department of Chemical Engineering and Materials Science / Department of Biomedical Engineering, CA, USA


According to our database1, Ray Luo authored at least 24 papers between 2000 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Bibliography

2024
End-to-End Reaction Field Energy Modeling via Deep Learning based Voxel-to-voxel Transform.
CoRR, 2024

2023
AmberTools.
J. Chem. Inf. Model., October, 2023

2021
Development of a Pantetheine Force Field Library for Molecular Modeling.
J. Chem. Inf. Model., 2021

Recent Force Field Strategies for Intrinsically Disordered Proteins.
J. Chem. Inf. Model., 2021

2020
Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins.
J. Chem. Inf. Model., 2020

2019
Robustness and Efficiency of Poisson-Boltzmann Modeling on Graphics Processing Units.
J. Chem. Inf. Model., 2019

Heterogeneous Dielectric Implicit Membrane Model for the Calculation of MMPBSA Binding Free Energies.
J. Chem. Inf. Model., 2019

An efficient second-order poisson-boltzmann method.
J. Comput. Chem., 2019

Dynamical important residue network (DIRN): network inference via conformational change.
Bioinform., 2019

2017
Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations.
J. Chem. Inf. Model., 2017

The IDP-Specific Force Field <i>ff14IDPSFF</i> Improves the Conformer Sampling of Intrinsically Disordered Proteins.
J. Chem. Inf. Model., 2017

Numerical interpretation of molecular surface field in dielectric modeling of solvation.
J. Comput. Chem., 2017

2016
Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis.
J. Chem. Inf. Model., 2016

Calculating protein-ligand binding affinities with MMPBSA: Method and error analysis.
J. Comput. Chem., 2016

2015
A semi-implicit augmented IIM for Navier-Stokes equations with open, traction, or free boundary conditions.
J. Comput. Phys., 2015

Test and Evaluation of <i>ff99IDPs</i> Force Field for Intrinsically Disordered Proteins.
J. Chem. Inf. Model., 2015

Applications of MMPBSA to Membrane Proteins I: Efficient Numerical Solutions of Periodic Poisson-Boltzmann Equation.
J. Chem. Inf. Model., 2015

2010
Assessment of linear finite-difference Poisson-Boltzmann solvers.
J. Comput. Chem., 2010

2006
Functional Census of Mutation Sequence Spaces: The Example of p53 Cancer Rescue Mutants.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006

2005
The Amber biomolecular simulation programs.
J. Comput. Chem., 2005

2003
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.
J. Comput. Chem., 2003

2002
Accelerated Poisson-Boltzmann calculations for static and dynamic systems.
J. Comput. Chem., 2002

2001
Ligand-receptor docking with the Mining Minima optimizer.
J. Comput. Aided Mol. Des., 2001

2000
Comparison of generalized born and poisson models: Energetics and dynamics of HIV protease.
J. Comput. Chem., 2000


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