Raunaq Malhotra

According to our database, Raunaq Malhotra authored at least 10 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data.

Weiling Li, Raunaq Malhotra, Steven H. Wu, Manjari Jha, Allen G. Rodrigo, Mary Poss, Raj Acharya

IEEE ACM Trans. Comput. Biol. Bioinform., 2024

2019

A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations.

Weiling Li, Lin Lin, Raunaq Malhotra, Lei Yang, Raj Acharya, Mary Poss

PLoS Comput. Biol., 2019

QuagmiR: a cloud-based application for isomiR big data analytics.

Xavier Bofill-De Ros, Kevin Chen, Susanna Chen, Nikola Tesic, Dusan Randjelovic, Nikola Skundric, Svetozar Nesic, Vojislav Varjacic, Elizabeth H. Williams, Raunaq Malhotra, Minjie Jiang, Shuo Gu

Bioinform., 2019

2017

A Generalized Lattice Based Probabilistic Approach for Metagenomic Clustering.

Manjari Jha, Raunaq Malhotra, Raj Acharya

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

2015

Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data.

Yang Liu, Francesca Chiaromonte, Howard Ross, Raunaq Malhotra, Daniel Elleder, Mary Poss

BMC Bioinform., 2015

A generalized lattice model for clustering metagenomic sequences.

Manjari Mukhopadhyay, Raunaq Malhotra, Raj Acharya

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism.

Le Bao, Daniel Elleder, Raunaq Malhotra, Michael Degiorgio, Theodora Maravegias, Lindsay Horvath, Laura Carrel, Colin Gillin, Tomás Hron, Helena Fábryová, David R. Hunter, Mary Poss

Comput., 2014

2013

Mutant-Bin: Unsupervised Haplotype Estimation of Viral Population Diversity Without Reference Genome.

Shruthi Prabhakara, Raunaq Malhotra, Raj Acharya, Mary Poss

J. Comput. Biol., 2013

Estimating Viral Haplotypes in a Population Using k-mer Counting.

Raunaq Malhotra, Shruthi Prabhakara, Mary Poss, Raj Acharya

Proceedings of the Pattern Recognition in Bioinformatics, 2013

2012

Predicting V(D)J Recombination Using Conditional Random Fields.

Raunaq Malhotra, Shruthi Prabhakara, Raj Acharya

Proceedings of the Pattern Recognition in Bioinformatics, 2012