Rasmus Nielsen

According to our database, Rasmus Nielsen authored at least 23 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

SCONCE2: jointly inferring single cell copy number profiles and tumor evolutionary distances.

Sandra Hui, Rasmus Nielsen

BMC Bioinform., 2022

AncestralClust: clustering of divergent nucleotide sequences by ancestral sequence reconstruction using phylogenetic trees.

Lenore Pipes, Rasmus Nielsen

Bioinform., 2022

SCONCE: a method for profiling copy number alterations in cancer evolution using single-cell whole genome sequencing.

Sandra Hui, Rasmus Nielsen

Bioinform., 2022

2020

Inferring the ancestry of parents and grandparents from genetic data.

Jingwen Pei, Yiming Zhang, Rasmus Nielsen, Yufeng Wu

PLoS Comput. Biol., 2020

A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data.

José Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Jyoti Dalal, Gabriel Renaud, Anders Albrechtsen, Rasmus Nielsen, Anna-Sapfo Malaspinas

Bioinform., 2020

2017

Fast admixture analysis and population tree estimation for SNP and NGS data.

Jade Yu Cheng, Thomas Mailund, Rasmus Nielsen

Bioinform., 2017

2016

A genomic history of Aboriginal Australia.

Anna-Sapfo Malaspinas, Michael C. Westaway, Craig Muller, Vitor C. Sousa, Oscar Lao, Isabel Alves, Anders Bergström, Georgios Athanasiadis, Jade Yu Cheng, Jacob E. Crawford, Tim H. Heupink, Enrico Macholdt, Stephan Peischl, Simon Rasmussen, Stephan Schiffels, Sankar Subramanian, Joanne L. Wright, Anders Albrechtsen, Chiara Barbieri, Isabelle Dupanloup, Anders Eriksson, Ashot Margaryan, Ida Moltke, Irina Pugach, Thorfinn Sand Korneliussen, Ivan P. Levkivskyi, José Víctor Moreno-Mayar, Shengyu Ni, Fernando Racimo, Martin Sikora, Yali Xue, Farhang A. Aghakhanian, Nicolas Brucato, Søren Brunak, Paula F. Campos, Warren Clark, Sturla Ellingvåg, Gudjugudju Fourmile, Pascale Gerbault, Darren Injie, George Koki, Matthew Leavesley, Betty Logan, Aubrey Lynch, Elizabeth A. Matisoo-Smith, Peter J. McAllister, Alexander J. Mentzer, Mait Metspalu, Andrea B. Migliano, Les Murgha, Maude E. Phipps, William Pomat, Doc Reynolds, Francois-Xavier Ricaut, Peter Siba, Mark G. Thomas, Thomas Wales, Colleen Ma'run Wall, Stephen J. Oppenheimer, Chris Tyler-Smith, Richard Durbin, Joe Dortch, Andrea Manica, Mikkel H. Schierup, Robert A. Foley, Marta Mirazón Lahr, Claire Bowern, Jeffrey D. Wall, Thomas Mailund, Mark Stoneking, Rasmus Nielsen, Manjinder S. Sandhu, Laurent Excoffier, David M. Lambert, Eske Willerslev

Nat., 2016

Estimating IBD tracts from low coverage NGS data.

Filipe G. Vieira, Anders Albrechtsen, Rasmus Nielsen

Bioinform., 2016

SweepFinder2: increased sensitivity, robustness and flexibility.

Michael Degiorgio, Christian D. Huber, Melissa J. Hubisz, Ines Hellmann, Rasmus Nielsen

Bioinform., 2016

Workshop message: IoT-SoS 2016.

Elias Z. Tragos, Rasmus Nielsen, Adam Kapovits, Claudio Cicconetti, Enzo Mingozzi, Jaudelice Cavalcante de Oliveira, Xiaohua Jia, Stefano Iellamo, Vangelis Angelakis

Proceedings of the 17th IEEE International Symposium on A World of Wireless, 2016

2015

Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming.

Dan Gusfield, Rasmus Nielsen

Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

2014

ANGSD: Analysis of Next Generation Sequencing Data.

Thorfinn Korneliussen, Anders Albrechtsen, Rasmus Nielsen

BMC Bioinform., 2014

<i>bammds: </i> a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS).

Anna-Sapfo Malaspinas, Ole Tange, José Víctor Moreno-Mayar, Morten Rasmussen, Michael Degiorgio, Yong Wang, Cristina E. Valdiosera, Gustavo Politis, Eske Willerslev, Rasmus Nielsen

Bioinform., 2014

<i>ngsTools</i>: methods for population genetics analyses from next-generation sequencing data.

Matteo Fumagalli, Filipe G. Vieira, Tyler Linderoth, Rasmus Nielsen

Bioinform., 2014

2013

Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data.

Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen

BMC Bioinform., 2013

2011

Estimation of allele frequency and association mapping using next-generation sequencing data.

Su Yeon Kim, Kirk E. Lohmueller, Anders Albrechtsen, Yingrui Li, Thorfinn Korneliussen, Geng Tian, Niels Grarup, Tao Jiang, Gitte Andersen, Daniel Witte, Torben Jørgensen, Torben Hansen, Oluf Pedersen, Jun Wang, Rasmus Nielsen

BMC Bioinform., 2011

2007

Dependence of paracentric inversion rate on tract length.

Thomas L. York, Richard Durrett, Rasmus Nielsen

BMC Bioinform., 2007

Finding <i>cis</i>-regulatory modules in <i>Drosophila</i> using phylogenetic hidden Markov models.

Wendy S. W. Wong, Rasmus Nielsen

Bioinform., 2007

2006

Identification of physicochemical selective pressure on protein encoding nucleotide sequences.

Wendy S. W. Wong, Raazesh Sainudiin, Rasmus Nielsen

BMC Bioinform., 2006

2005

Detecting coevolving amino acid sites using Bayesian mutational mapping.

Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen

Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

2002

Bayesian Estimation of the Number of Inversions in the History of Two Chromosomes.

Thomas L. York, Richard Durrett, Rasmus Nielsen

J. Comput. Biol., 2002

PATRI-paternity inference using genetic data.

J. Signorovitch, Rasmus Nielsen

Bioinform., 2002

Detecting Positively Selected Amino Acid Sites Using Posterior Predictive P-Values.

Rasmus Nielsen, John P. Huelsenbeck

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002