Rashmie Abeysinghe

According to our database, Rashmie Abeysinghe authored at least 27 papers between 2017 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Quantitatively assessing the impact of the quality of SNOMED CT subtype hierarchy on cohort queries.

Xubing Hao, Xiaojin Li, Yan Huang, Jay Shi, Rashmie Abeysinghe, Cui Tao, Kirk Roberts, Guo-Qiang Zhang, Licong Cui

J. Am. Medical Informatics Assoc., 2025

2024

Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements.

Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Paul E. Schulz, Licong Cui

BMC Medical Informatics Decis. Mak., December, 2024

Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies.

Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D. Lhatoo, Licong Cui

J. Biomed. Semant., December, 2024

Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS.

Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui

Proceedings of the Artificial Intelligence in Medicine - 22nd International Conference, 2024

2023

Logical definition-based identification of potential missing concepts in SNOMED CT.

Xubing Hao, Rashmie Abeysinghe, Kirk Roberts, Licong Cui

BMC Medical Informatics Decis. Mak., December, 2023

A deep learning approach to identify missing <i>is-a</i> relations in SNOMED CT.

Rashmie Abeysinghe, Fengbo Zheng, Elmer V. Bernstam, Jay Shi, Olivier Bodenreider, Licong Cui

J. Am. Medical Informatics Assoc., February, 2023

2022

Towards quality improvement of vaccine concept mappings in the OMOP vocabulary with a semi-automated method.

Rashmie Abeysinghe, Adam Black, Denys Kaduk, Yupeng Li, Christian Reich, Alexander Davydov, Lixia Yao, Licong Cui

J. Biomed. Informatics, 2022

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs.

Warren Manuel, Rashmie Abeysinghe, Yongqun He, Cui Tao, Licong Cui

J. Biomed. Semant., 2022

An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations.

Rashmie Abeysinghe, Yuntao Yang, Mason Bartels, W. Jim Zheng, Licong Cui

Briefings Bioinform., 2022

IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements.

Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Identifying Missing IS-A Relations in Orphanet Rare Disease Ontology.

Maryamsadat Mohtashamian, Rashmie Abeysinghe, Xubing Hao, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

A substring replacement approach for identifying missing IS-A relations in SNOMED CT.

Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology.

Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui

Proceedings of the AMIA 2022, 2022

2021

Identification of missing concepts in biomedical terminologies using sequence-based formal concept analysis.

Fengbo Zheng, Rashmie Abeysinghe, Licong Cui

BMC Medical Informatics Decis. Mak., 2021

Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT.

Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology.

Rashmie Abeysinghe, Fengbo Zheng, Licong Cui

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Detecting missing IS-A relations in the NCI Thesaurus using an enhanced hybrid approach.

Fengbo Zheng, Rashmie Abeysinghe, Nicholas Sioutos, Lori Whiteman, Lyubov Remennik, Licong Cui

BMC Medical Informatics Decis. Mak., 2020

SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology.

Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui

Bioinform., 2020

2019

Pattern-based Extraction of Disease Drug Combination Knowledge from Biomedical Literature.

Jing Liu, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui

Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

A Hybrid Method to Detect Missing Hierarchical Relations in NCI Thesaurus.

Fengbo Zheng, Rashmie Abeysinghe, Licong Cui

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus.

Rashmie Abeysinghe, Michael A. Brooks, Licong Cui

Proceedings of the AMIA 2019, 2019

2018

Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource.

Rashmie Abeysinghe, Licong Cui

BMC Medical Informatics Decis. Mak., 2018

A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies.

Rashmie Abeysinghe, Fengbo Zheng, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels.

Rashmie Abeysinghe, Xufeng Qu, Licong Cui

Proceedings of the AMIA 2018, 2018

2017

Auditing subtype inconsistencies among gene ontology concepts.

Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Query-constraint-based association rule mining from diverse clinical datasets in the national sleep research resource.

Rashmie Abeysinghe, Licong Cui

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns.

Rashmie Abeysinghe, Michael A. Brooks, Jeffery C. Talbert, Licong Cui

Proceedings of the AMIA 2017, 2017