Randy W. Heiland

According to our database, Randy W. Heiland authored at least 20 papers between 1999 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2024

Building multiscale models with PhysiBoSS, an agent-based modeling tool.

Marco Ruscone, Andrea Checcoli, Randy W. Heiland, Emmanuel Barillot, Paul Macklin, Laurence Calzone, Vincent Noël

Briefings Bioinform., 2024

2019

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.

Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson

Nat., 2019

xml2jupyter: Mapping parameters between XML and Jupyter widgets.

Randy W. Heiland, Daniel Mishler, Tyler Zhang, Eric Bower, Paul Macklin

J. Open Source Softw., 2019

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.

Gaëlle Letort, Arnau Montagud, Gautier Stoll, Randy W. Heiland, Emmanuel Barillot, Paul Macklin, Andrei Yu. Zinovyev, Laurence Calzone

Bioinform., 2019

Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences.

Mats Rynge, Karan Vahi, Ewa Deelman, Anirban Mandal, Ilya Baldin, Omkar Bhide, Randy W. Heiland, Von Welch, Raquel Hill, William L. Poehlman, F. Alex Feltus

Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), 2019

Students' Use of Metacognitive Skills in Undergraduate Research Experiences in Computational Modeling.

Aasakiran Madamanchi, Randy W. Heiland, Paul Macklin, Alejandra J. Magana

Proceedings of the IEEE Frontiers in Education Conference, 2019

2018

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.

Ahmadreza Ghaffarizadeh, Randy W. Heiland, Samuel H. Friedman, Shannon M. Mumenthaler, Paul Macklin

PLoS Comput. Biol., 2018

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.

Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland, Gary An, Paul Macklin

BMC Bioinform., 2018

2017

Science Gateways Incubator: Software Sustainability Meets Community Needs.

Sandra Gesing, Michael G. Zentner, Juliana Casavan, Betsy Hillery, Mihaela Vorvoreanu, Randy W. Heiland, Suresh Marru, Marlon E. Pierce, Nayiri Mullinix, Nancy Maron

Proceedings of the 13th IEEE International Conference on e-Science, 2017

2015

Authentication and Authorization Considerations for a Multi-tenant Service.

Randy W. Heiland, Scott Koranda, Suresh Marru, Marlon E. Pierce, Von Welch

Proceedings of the 1st Workshop on The Science of Cyberinfrastructure, 2015

2014

The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents.

James P. Sluka, Abbas Shirinifard, Maciej Swat, Alin Cosmanescu, Randy W. Heiland, James A. Glazier

Bioinform., 2014

2013

Toward a Research Software Security Maturity Model.

Randy W. Heiland, Betsy Thomas, Von Welch, Craig Jackson

CoRR, 2013

2012

Visualizing cells and their connectivity graphs for CompuCell3D.

Randy W. Heiland, Abbas Shirinifard, Maciej Swat, Gilberto L. Thomas, James P. Sluka, Andrew Lumsdaine, Benjamin Zaitlen, James A. Glazier

Proceedings of the 2012 IEEE Symposium on Biological Data Visualization, 2012

2010

Workflows for parameter studies of multi-cell modeling.

Randy W. Heiland, Maciej Swat, Benjamin Zaitlen, James A. Glazier, Andrew Lumsdaine

Proceedings of the 2010 Spring Simulation Multiconference, 2010

2008

MutDB: update on development of tools for the biochemical analysis of genetic variation.

Arti Singh, Adebayo Olowoyeye, Peter H. Baenziger, Jessica Dantzer, Maricel G. Kann, Predrag Radivojac, Randy W. Heiland, Sean D. Mooney

Nucleic Acids Res., 2008

2007

Web Service Infrastructure for Chemoinformatics.

Xiao Dong, Kevin E. Gilbert, Rajarshi Guha, Randy W. Heiland, Jungkee Kim, Marlon E. Pierce, Geoffrey Charles Fox, David J. Wild

J. Chem. Inf. Model., 2007

<i>NLOPredict: </i> Visualization and data analysis software for nonlinear optics.

Andrew J. Moad, Charles W. Moad, John M. Perry, Ronald D. Wampler, G. Scott Goeken, Nathan J. Begue, Tian Shen, Randy W. Heiland, Garth J. Simpson

J. Comput. Chem., 2007

2005

MutDB services: interactive structural analysis of mutation data.

Jessica Dantzer, Charles W. Moad, Randy W. Heiland, Sean D. Mooney

Nucleic Acids Res., 2005

2001

VisBench: A Framework for Remote Data Visualization and Analysis.

Randy W. Heiland, M. Pauline Baker, Danesh K. Tafti

Proceedings of the Computational Science - ICCS 2001, 2001

1999

A Survey of Visualization Tools for High Performance Computing.

Randy W. Heiland, M. Pauline Baker

Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999