Randi Vita

According to our database, Randi Vita authored at least 25 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.

Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Cecilia N. Arighi, Kristian B. Axelsen, Evan Bolton, Emily Bordeleau, Nathan J. Edwards, Elisa Fadda, Ten Feizi, Catherine A. Hayes, Callum M. Ives, Hiren J. Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frédérique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Jesus Martin, Akul Y. Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D. Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder

Database J. Biol. Databases Curation, January, 2024

2023

PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins.

Daniel Marrama, William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Kosaloglu-Yalçin, Alessandro Sette, Morten Nielsen, Jason A. Greenbaum, Bjoern Peters

BMC Bioinform., December, 2023

Coronavirus Immunotherapeutic Consortium Database.

Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters

Database J. Biol. Databases Curation, February, 2023

The Cancer Epitope Database and Analysis Resource (CEDAR).

Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., January, 2023

2022

Towards the prediction of non-peptidic epitopes.

Paul F. Zierep, Randi Vita, Nina Blazeska, Aurélien F. A. Moumbock, Jason A. Greenbaum, Bjoern Peters, Stefan Günther

PLoS Comput. Biol., 2022

COB: A Core Ontology for Biology and Biomedicine.

James A. Overton, Rebecca C. Jackson, Nicolas Matentzoglu, William D. Duncan, Randi Vita, Nomi L. Harris, Christopher J. Mungall, Bjoern Peters

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

2021

Standardization of assay representation in the Ontology for Biomedical Investigations.

Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.

Database J. Biol. Databases Curation, 2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters

Database J. Biol. Databases Curation, 2021

An immunologically friendly classification of non-peptidic ligands.

Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette

Database J. Biol. Databases Curation, 2021

2020

A structured model for immune exposures.

Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters

Database J. Biol. Databases Curation, 2020

2019

The Immune Epitope Database (IEDB): 2018 update.

Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., 2019

Reporting and connecting cell type names and gating definitions through ontologies.

James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters

BMC Bioinform., 2019

2018

ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins.

Sandeep Kumar Dhanda, Randi Vita, Brendan Ha, Alba Grifoni, Bjoern Peters, Alessandro Sette

Bioinform., 2018

Identification of errors in the IEDB using ontologies.

Randi Vita, James A. Overton, Bjoern Peters

Database J. Biol. Databases Curation, 2018

FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.

Randi Vita, James A. Overton, Christopher J. Mungall, Alessandro Sette, Bjoern Peters

Database J. Biol. Databases Curation, 2018

Formalizing the Representation of Immune Exposures for Human Immunology Studies.

Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2017

Better living through ontologies at the Immune Epitope Database.

Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters

Database J. Biol. Databases Curation, 2017

Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration.

Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters

Proceedings of Workshops and Tutorials of the 9th International Conference on Knowledge Capture (K-CAP2017), 2017

2016

An ontology for major histocompatibility restriction.

Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters

J. Biomed. Semant., 2016

2015

The immune epitope database (IEDB) 3.0.

Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., 2015

2013

Query enhancement through the practical application of ontology: the IEDB and OBI.

Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters

J. Biomed. Semant., 2013

A Taxonomy for Immunologists.

James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2010

The Immune Epitope Database 2.0.

Randi Vita, Laura Zarebski, Jason Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Björn Peters

Nucleic Acids Res., 2010

2006

The Biocurator: Connecting and Enhancing Scientific Data.

Nima Salimi, Randi Vita

PLoS Comput. Biol., 2006

Curation of complex, context-dependent immunological data.

Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey, Muthu Sathiamurthy, John Mokili, Huynh-Hoa Bui, Philip E. Bourne, Julia V. Ponomarenko, Romulo de Castro Jr., Russell K. Chan, John Sidney, Stephen S. Wilson, Scott Stewart, Scott Way, Björn Peters, Alessandro Sette

BMC Bioinform., 2006