Ramana V. Davuluri

Orcid: 0000-0002-7053-1064

According to our database1, Ramana V. Davuluri authored at least 26 papers between 1999 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

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Bibliography

2024
DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models.
CoRR, 2024

DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genomes.
Proceedings of the Twelfth International Conference on Learning Representations, 2024

2023
DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.
CoRR, 2023

2021
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome.
Bioinform., 2021

ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs.
Bioinform., 2021

2019
Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of de novo Glioblastoma Patients.
Frontiers Comput. Neurosci., 2019

2017
Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms.
Briefings Bioinform., 2017

2015
Identification of candidate regulatory SNPs by integrative analysis for prostate cancer genome data.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier.
Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2013
NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data.
BMC Bioinform., 2013

2011
Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.
Nucleic Acids Res., 2011

MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data.
Nucleic Acids Res., 2011

IsoformEx: Isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data.
BMC Bioinform., 2011

2010
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data.
BMC Bioinform., 2010

Estimating the Expression of Transcript Isoforms from mRNA-Seq via Nonnegative Least Squares.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
BMC Syst. Biol., 2009

2006
MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.
Nucleic Acids Res., 2006

Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs.
BMC Bioinform., 2006

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
Bioinform., 2006

2005
OMGProm: a database of orthologous mammalian gene promoters.
Bioinform., 2005

2004
HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development.
Nucleic Acids Res., 2004

Java-based application framework for visualization of gene regulatory region annotations.
Bioinform., 2004

2003
AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis <i>cis</i>-regulatory elements and transcription factors.
BMC Bioinform., 2003

2001
Identifying the 3'-terminal exon in human DNA.
Bioinform., 2001

1999
Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences.
Bioinform., 1999


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