Ralf Zimmer
Orcid: 0000-0003-1439-2327Affiliations:
- Ludwig Maximilian University of Munich, Germany
According to our database1,
Ralf Zimmer
authored at least 89 papers
between 1990 and 2022.
Collaborative distances:
Collaborative distances:
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Bibliography
2022
Comparison of Stranded and Non-stranded RNA-Seq in Predicting Small RNAs in a Non-model Bacterium.
Proceedings of the Bioinformatics and Biomedical Engineering, 2022
Proceedings of the Bioinformatics and Biomedical Engineering, 2022
2021
Briefings Bioinform., 2021
2020
CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.
Bioinform., 2020
2019
Database J. Biol. Databases Curation, 2019
2017
Bioinformatics advances biology and medicine by turning big data troves into knowledge.
Inform. Spektrum, 2017
Bioinform., 2017
Bioinformatics Advances Biology and Medicine by Turning Big Data Troves into Knowledge.
Proceedings of the 50 Jahre Universitäts-Informatik in München, 2017
2016
Proceedings of the Modeling in Systems Biology, The Petri Net Approach, 2016
Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis.
BMC Bioinform., 2016
2015
2013
2012
BMC Bioinform., 2012
A context-based approach to identify the most likely mapping for RNA-seq experiments.
BMC Bioinform., 2012
Proceedings of the German Conference on Bioinformatics 2012, 2012
2011
Bioinform., 2011
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.
Bioinform., 2011
2010
Characterization of Growth and Metabolism of the Haloalkaliphile <i>Natronomonas pharaonis</i>.
PLoS Comput. Biol., 2010
miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature.
BMC Bioinform., 2010
Bioinform., 2010
Classification of ncRNAs using position and size information in deep sequencing data.
Bioinform., 2010
Bioinform., 2010
2009
Systems Analysis of Bioenergetics and Growth of the Extreme Halophile <i>Halobacterium salinarum</i>.
PLoS Comput. Biol., 2009
Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast.
J. Comput. Biol., 2009
Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu quantitativen Systemmodellen.
Inform. Spektrum, 2009
Bioinform., 2009
2008
ProSAS: a database for analyzing alternative splicing in the context of protein structures.
Nucleic Acids Res., 2008
AutoPSI: a database for automatic structural classification of protein sequences and structures.
Nucleic Acids Res., 2008
FERN - a Java framework for stochastic simulation and evaluation of reaction networks.
BMC Bioinform., 2008
Assigning functional linkages to proteins using phylogenetic profiles and continuous phenotypes.
Bioinform., 2008
Proceedings of the 38. Jahrestagung der Gesellschaft für Informatik, Beherrschbare Systeme, 2008
Proceedings of the German Conference on Bioinformatics, 2008
Proceedings of the ECCB'08 Proceedings, 2008
2007
Influence of degree correlations on network structure and stability in protein-protein interaction networks.
BMC Bioinform., 2007
AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
Bioinform., 2007
2006
Inferring topology from clustering coefficients in protein-protein interaction networks.
BMC Bioinform., 2006
SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles.
Bioinform., 2006
Reliable gene signatures for microarray classification: assessment of stability and performance.
Bioinform., 2006
Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data.
Proceedings of the Advances in Data Analysis, 2006
Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006
2005
BMC Bioinform., 2005
Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
Identifying active transcription factors and kinases from expression data using pathway queries.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
2004
Bioinform., 2004
Arby: automatic protein structure prediction using profile-profile alignment and confidence measures.
Bioinform., 2004
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinform., 2004
Factors Influencing the Design of Mobile Services.
Proceedings of the Mobile Information Systems, 2004
Combining Secondary Structure Element Alignment and Profile-Profile Alignment for Fold Recognition.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004
2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
2002
ProML - the Protein Markup Language for specification of protein sequences, structures and families.
Silico Biol., 2002
A hypergraph-based method for unification of existing protein structure- and sequence-families.
Silico Biol., 2002
Improving fold recognition of protein threading by experimental distance constraints.
Silico Biol., 2002
Co-clustering of biological networks and gene expression data.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002
2001
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001
Centralization: a new method for the normalization of gene expression data.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001
Confidence Measures for Fold Recognition.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
A new Method for Unification of Existing Protein Structure- and Sequence-Families.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
2000
Bioinform., 2000
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
1999
Proceedings of the 4th Pacific Symposium on Biocomputing, 1999
Pathway analysis in metabolic databases via differetial metabolic display (DMD).
Proceedings of the German Conference on Bioinformatics, 1999
1998
Bioinform., 1998
1997
Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997
1996
Fast Protein Fold Recognition and Accurate Sequence to Structure Alignment.
Proceedings of the German Conference on Bioinformatics, 1996
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996
1995
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
1990
Zur Pragmatik eines operationalisierten λ-Kalküls als Basis für interaktive Reduktionssysteme.
PhD thesis, 1990