Ralf Bundschuh

Orcid: 0000-0002-6699-8614

According to our database1, Ralf Bundschuh authored at least 27 papers between 1998 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2022
dsRBPBind: modeling the effect of RNA secondary structure on double-stranded RNA-protein binding.
Bioinform., 2022

2020
Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures.
PLoS Comput. Biol., 2020

2019
A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction.
BMC Bioinform., 2019

RiboProP: a probabilistic ribosome positioning algorithm for ribosome profiling.
Bioinform., 2019

2016
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data.
Briefings Bioinform., 2016

2015
The search for the determinants of insertional RNA editing in Physarum polycephalum mitochondrial RNAs.
Proceedings of the BICT 2015, 2015

2014
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.
Bioinform., 2014

2012
Comparison of Insertional RNA Editing in <i>Myxomycetes</i>.
PLoS Comput. Biol., 2012

2011
A performance enhanced PSI-BLAST based on hybrid alignment.
Bioinform., 2011

A scalable, flexible workflow for MethylCap-seq data analysis.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010
Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure.
Bioinform., 2010

2009
SIB-BLAST: a web server for improved delineation of true and false positives in PSI-BLAST searches.
Nucleic Acids Res., 2009

2008
Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches.
Bioinform., 2008

Genome annotation in the presence of insertional RNA editing.
Bioinform., 2008

2007
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics.
J. Comput. Biol., 2007

Large scale genotype-phenotype correlation analysis based on phylogenetic trees.
Bioinform., 2007

2006
A Practical Approach to Significance Assessment in Alignment with Gaps.
J. Comput. Biol., 2006

Alignment Statistics for Long-Range Correlated Genomic Sequences.
Proceedings of the Research in Computational Molecular Biology, 2006

2005
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2004
Using hybrid alignment for iterative sequence database searches.
Concurr. Pract. Exp., 2004

Computational prediction of RNA editing sites.
Bioinform., 2004

2002
Rapid Significance Estimation in Local Sequence Alignment with Gaps.
J. Comput. Biol., 2002

Hybrid alignment: high-performance with universal statistics.
Bioinform., 2002

2000
An analytic study of the phase transition line in local sequence alignment with gaps.
Discret. Appl. Math., 2000

An analytic approach to significance assessment in local sequence alignment with gaps.
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999
Rapid Assessment of Extremal Statistics for Gapped Local Alignment.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998
Detectability of Sequence Homology by DNA Hybridization.
Proceedings of the German Conference on Bioinformatics, 1998


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