Rainer Merkl

According to our database, Rainer Merkl authored at least 19 papers between 2003 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

Rosetta design with co-evolutionary information retains protein function.

Samuel Schmitz, Moritz Ertelt, Rainer Merkl, Jens Meiler

PLoS Comput. Biol., 2021

2020

Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products.

Robert Esch, Rainer Merkl

BMC Bioinform., 2020

2017

Rosetta: MSF: a modular framework for multi-state computational protein design.

Patrick Löffler, Samuel Schmitz, Enrico Hupfeld, Reinhard Sterner, Rainer Merkl

PLoS Comput. Biol., 2017

AGeNNT: annotation of enzyme families by means of refined neighborhood networks.

Florian Kandlinger, Maximilian G. Plach, Rainer Merkl

BMC Bioinform., 2017

2015

An assessment of catalytic residue 3D ensembles for the prediction of enzyme function.

Clemens Zvácek, Gerald Friedrichs, Leonhard Heizinger, Rainer Merkl

BMC Bioinform., 2015

2014

H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments.

Jan-Oliver Janda, Ajmal Popal, Jochen Bauer, Markus Busch, Michael Klocke, Wolfgang Spitzer, Jörg Keller, Rainer Merkl

BMC Bioinform., 2014

2013

CLIPS-4D: a classifier that distinguishes structurally and functionally important residue-positions based on sequence and 3D data.

Jan-Oliver Janda, Andreas Meier, Rainer Merkl

Bioinform., 2013

2012

CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure.

Jan-Oliver Janda, Markus Busch, Fabian Kück, Mikhail Porfenenko, Rainer Merkl

BMC Bioinform., 2012

2011

Key2Ann: a tool to process sequence sets by replacing database identifiers with a human-readable annotation.

Andreas Pürzer, Felix Grassmann, Dietmar Birzer, Rainer Merkl

J. Integr. Bioinform., 2011

PROCOS: Computational analysis of protein-protein complexes.

Florian Fink, Jochen Hochrein, Vincent Wolowski, Rainer Merkl, Wolfram Gronwald

J. Comput. Chem., 2011

2009

TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis.

André Fischer, Nils Enkler, Gerd Neudert, Marco Bocola, Reinhard Sterner, Rainer Merkl

BMC Bioinform., 2009

2008

<i>H2r</i>: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments.

Rainer Merkl, Matthias Zwick

BMC Bioinform., 2008

2006

AMIGOS: A Method for the Inspection of Genomic Organisation or Structure and its Application to Characterise Conserved Gene Arrangements.

Rainer Merkl

Silico Biol., 2006

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

Stephan Waack, Oliver Keller, Roman Asper, Thomas Brodag, Carsten Damm, Wolfgang Florian Fricke, Katharina Surovcik, Peter Meinicke, Rainer Merkl

BMC Bioinform., 2006

2004

SIGI: score-based identification of genomic islands.

Rainer Merkl

BMC Bioinform., 2004

Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites.

Peter Meinicke, Maike Tech, Burkhard Morgenstern, Rainer Merkl

BMC Bioinform., 2004

2003

secureBLAST.

Arnim Wiezer, Rainer Merkl

Silico Biol., 2003

YACOP: Enhanced gene prediction obtained by a combination of existing methods.

Maike Tech, Rainer Merkl

Silico Biol., 2003

Bioinformatik interaktiv - Algorithmen und Praxis.

Rainer Merkl, Stephan Waack

Wiley-VCH, ISBN: 978-3-527-30662-6, 2003