Raghu Machiraju

Orcid: 0000-0002-8101-8119

According to our database1, Raghu Machiraju authored at least 121 papers between 1993 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2024
Creating intelligent cyberinfrastructure for democratizing AI.
AI Mag., 2024

2023
Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images.
Frontiers Bioinform., May, 2023

2022
Uncertainty Aware Sampling Framework of Weak-Label Learning for Histology Image Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022


2021
Improving Compound Activity Classification via Deep Transfer and Representation Learning.
CoRR, 2021

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements.
BMC Bioinform., 2021

Learning Latent Structures for Cross Action Phrase Relations in Wet Lab Protocols.
Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, 2021

2020
GEMS: GPU-enabled memory-aware model-parallelism system for distributed DNN training.
Proceedings of the International Conference for High Performance Computing, 2020

PTR Explorer: An approach to identify and explore Post Transcriptional Regulatory mechanisms usingproteogenomics.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019
Visual Exploration of Neural Document Embedding in Information Retrieval: Semantics and Feature Selection.
IEEE Trans. Vis. Comput. Graph., 2019

Capturing variations in nuclear phenotypes.
J. Comput. Sci., 2019

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge.
BMC Bioinform., 2019

Integrative cancer patient stratification via subspace merging.
Bioinform., 2019

Data Commons to Support University-Wide Cross Discipline Research.
Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), 2019

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018
Workshop on Patient Similitude: Combining Histopathological Images & Multiple-Scale Molecular Phenotypes (NII Shonan Meeting 2018-17).
NII Shonan Meet. Rep., 2018

Building trans-omics evidence: using imaging and 'omics' to characterize cancer profiles.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

An Annotated Corpus for Machine Reading of Instructions in Wet Lab Protocols.
Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2018

2017
Predictive models for pressure ulcers from intensive care unit electronic health records using Bayesian networks.
BMC Medical Informatics Decis. Mak., 2017

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq.
Bioinform., 2017

Spatiotemporal Visualization of Gene Expression in the Developing Mouse Brain.
Proceedings of the 19th Eurographics Conference on Visualization, 2017

Visualizing Article Similarities via Sparsified Article Network and Map Projection for Systematic Reviews.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

2016
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes.
PLoS Comput. Biol., 2016

Identification of recurrent combinatorial patterns of chromatin modifications at promoters across various tissue types.
BMC Bioinform., 2016

2015
GRAPHIE: graph based histology image explorer.
BMC Bioinform., December, 2015

Identify Critical Genes in Development with Consistent H3K4me2 Patterns across Multiple Tissues.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

An uncertainty-driven approach to vortex analysis using oracle consensus and spatial proximity.
Proceedings of the 2015 IEEE Pacific Visualization Symposium, 2015

Examining the Distribution, Modularity, and Community Structure in Article Networks for Systematic Reviews.
Proceedings of the AMIA 2015, 2015

2014
Fixing the Mercator Projection for the Internet Age.
Computer, 2014

Boosting Techniques for Physics-Based Vortex Detection.
Comput. Graph. Forum, 2014

Visualizing Multidimensional Data with Glyph SPLOMs.
Comput. Graph. Forum, 2014

Visual Analytics for Biological Data.
IEEE Computer Graphics and Applications, 2014

2013 IEEE Scientific Visualization Contest Winner: Observing Genomics and Phenotypical Patterns in the Developing Mouse Brain.
IEEE Computer Graphics and Applications, 2014

iGPSe: A visual analytic system for integrative genomic based cancer patient stratification.
BMC Bioinform., 2014

2013
Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets.
J. Am. Medical Informatics Assoc., 2013

Identify condition-specific gene co-expression networks.
Int. J. Comput. Biol. Drug Des., 2013

CAVIAR-Based Vortex Core Region Detection.
Proceedings of the 2013 International Conference on Computer-Aided Design and Computer Graphics, 2013

Robust detection and visualization of cytoskeletal structures in fibrillar scaffolds from 3-dimensional confocal image.
Proceedings of the IEEE Symposium on Biological Data Visualization, 2013

2012
A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data.
BMC Bioinform., 2012

Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011
Message from the Paper Chairs and Guest Editors.
IEEE Trans. Vis. Comput. Graph., 2011

Spatio-temporal models of mental processes from fMRI.
NeuroImage, 2011

Non-parametric Population Analysis of Cellular Phenotypes.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Susceptibility Distortion Correction for Echo Planar Images with Non-uniform B-Spline Grid Sampling: A Diffusion Tensor Image Study.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning.
Proceedings of the Information Processing in Medical Imaging, 2011

State-Space Models of Mental Processes from fMRI.
Proceedings of the Information Processing in Medical Imaging, 2011

2010
Guest Editors' Introduction: Special Section on Volume Graphics and Point-Based Graphics.
IEEE Trans. Vis. Comput. Graph., 2010

Preface.
IEEE Trans. Vis. Comput. Graph., 2010

Unsupervised Learning of Brain States from fMRI Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Analysis of spatial variation of nuclear morphology in tissue microenvironments.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Anisotropic plate diffusion filtering for detection of cell membranes in 3D microscopy images.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Measuring effects of latency in brain activity with FMRI.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

Two-point correlation as a feature for histology images: Feature space structure and correlation updating.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2010

2009
Tensor classification of N-point correlation function features for histology tissue segmentation.
Medical Image Anal., 2009

Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging.
Medical Image Anal., 2009

Visual Analysis of Brain Activity from fMRI Data.
Comput. Graph. Forum, 2009

Diffusion Tensor Field Registration in the Presence of Uncertainty.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

2008
Visualizing Particle/Flow Structure Interactions in the Small Bronchial Tubes.
IEEE Trans. Vis. Comput. Graph., 2008

Reconstruction of Cellular Biological Structures from Optical Microscopy Data.
IEEE Trans. Vis. Comput. Graph., 2008

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets.
J. Biomed. Informatics, 2008

Geometry-driven Visualization of Microscopic Structures in Biology.
Comput. Graph. Forum, 2008

Classification and Uncertainty Visualization of Dendritic Spines from Optical Microscopy Imaging.
Comput. Graph. Forum, 2008

Automatic Deformable Diffusion Tensor Registration for Fiber Population Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Microstructure preserving synthesis of biomedical images.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Geometry-driven visualization of microscopic structures in biology.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007
Coverage optimization to support security monitoring.
Comput. Environ. Urban Syst., 2007

Physics-Based Subsurface Visualization of Human Tissue.
IEEE Trans. Vis. Comput. Graph., 2007

Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies.
IEEE Trans. Medical Imaging, 2007

Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data.
Comput. Sci. Eng., 2007

Special section on the joint Symposium on Point-based Graphics and Volume Graphics 2006.
Comput. Graph., 2007

Multi-Resolution Image Segmentation Using the 2-Point Correlation Functions.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Activity Analysis Using Spatio-Temporal Trajectory Volumes in Surveillance Applications.
Proceedings of the 2nd IEEE Symposium on Visual Analytics Science and Technology, 2007

2006
Accelerating subsurface scattering using Cholesky factorization.
Vis. Comput., 2006

Vortex Visualization for Practical Engineering Applications.
IEEE Trans. Vis. Comput. Graph., 2006

Path-based control of smoke simulations.
Proceedings of the 2006 ACM SIGGRAPH/Eurographics Symposium on Computer Animation, 2006

Registration and 3D visualization of large microscopy images.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Preventing Signal Degradation During Elastic Matching of Noisy DCE-MR Eye Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Visual Exploration of Spatio-temporal Relationships for Scientific Data.
Proceedings of the 1st IEEE Symposium On Visual Analytics Science And Technology, 2006

On Trajectory Representation for Scientific Features.
Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

2005
Spatial Domain Wavelet Design for Feature Preservation in Computational Data Sets.
IEEE Trans. Vis. Comput. Graph., 2005

Efficient rendering of multiblock curvilinear grids with complex boundaries.
Comput. Animat. Virtual Worlds, 2005

A Simplified Model for Inhomogeneous Subsurface Scattering.
Proceedings of the 4th Eurographics / IEEE VGTC International Workshop on Volume Graphics, 2005

Dynamic Classification of Defect Structures in Molecular Dynamics Simulation Data.
Proceedings of the 2005 SIAM International Conference on Data Mining, 2005

Estimation of 3D Faces and Illumination from Single Photographs Using A Bilinear Illumination Model.
Proceedings of the Eurographics Symposium on Rendering Techniques, Konstanz, Germany, June 29, 2005

Parallelizing a Defect Detection and Categorization Application.
Proceedings of the 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 2005

A Bilinear Illumination Model for Robust Face Recognition.
Proceedings of the 10th IEEE International Conference on Computer Vision (ICCV 2005), 2005

Markerless monocular motion capture using image features and physical constraints.
Proceedings of the Computer Graphics International 2005, 2005

Detection and Visualization of Vortices.
Proceedings of the Visualization Handbook., 2005

2004
Detection and Visualization of Anomalous Structures in Molecular Dynamics Simulation Data.
Proceedings of the 15th IEEE Visualization Conference, 2004

Rough Interface Reconstruction Using the Level Set Method.
Proceedings of the 15th IEEE Visualization Conference, 2004

Improvements to Response-Surface Based Vehicle Design Using a Feature-Centric Approach.
Proceedings of the Computational Science, 2004

Finding Optimal Views for 3D Face Shape Modeling.
Proceedings of the Sixth IEEE International Conference on Automatic Face and Gesture Recognition (FGR 2004), 2004

2003
Do I Really See a Bone?
Proceedings of the 14th IEEE Visualization Conference, 2003

Rough Surface Modeling Using Surface Growth.
Proceedings of the 2003 International Conference on Shape Modeling and Applications (SMI 2003), 2003

Feature Mining Paradigms for Scientific Data.
Proceedings of the Third SIAM International Conference on Data Mining, 2003

Silhouette-Based 3D Face Shape Recovery.
Proceedings of the Graphics Interface 2003 Conference, 2003

Ranked representation of vector fields.
Proceedings of the Data Visualization: The State of the Art, 2003

Model-Based 3D Face Capture with Shape-from-Silhouettes.
Proceedings of the 2003 IEEE International Workshop on Analysis and Modeling of Faces and Gestures (AMFG 2003), 2003

2002
Physics-based feature mining for large data exploration.
Comput. Sci. Eng., 2002

Feature estimation for efficient streaming.
Proceedings of the IEEE/SIGGRAPH Symposium on Volume Visualization and Graphics, 2002

Shading for Fourier Volume Rendering.
Proceedings of the IEEE/SIGGRAPH Symposium on Volume Visualization and Graphics, 2002

Geometric Verification of Features in Flow Fields.
Proceedings of the 13th IEEE Visualization Conference, 2002

Statistical Computation of Salient ISO-Values.
Proceedings of the 4th Joint Eurographics - IEEE TCVG Symposium on Visualization, 2002

A Novel Approach To Vortex Core Region Detection.
Proceedings of the 4th Joint Eurographics - IEEE TCVG Symposium on Visualization, 2002

2001
The Transfer Function Bake-Off.
IEEE Computer Graphics and Applications, 2001

Salient Iso-Surface Detection with Model-Independent Statistical Signatures.
Proceedings of the 12th IEEE Visualization Conference, 2001

Approximate Shading for the Re-Illumination of Synthetic Images.
Proceedings of the 12th IEEE Visualization Conference, 2001

2000
Enabling level-of-detail matching for exterior scene synthesis.
Proceedings of the 11th IEEE Visualization Conference, 2000

1999
Structured Spatial Domain Image and Data Comparison Metrics.
Proceedings of the 10th IEEE Visualization Conference, 1999

Dynamic view-dependent partitioning for structured grids with complex boundaries for object-order rendering techniques.
Proceedings of the 1999 IEEE Symposium on Parallel Visualization and Graphics, 1999

1998
Structure-Significant Representation of Structured Datasets.
IEEE Trans. Vis. Comput. Graph., 1998

Design of Accurate and Smooth Filters for Function and Derivative Reconstruction.
Proceedings of the Proceeding of the 1998 IEEE Symposium on Volume Visualization, 1998

1997
Evaluation and Design of Filters Using a Taylor Series Expansion.
IEEE Trans. Vis. Comput. Graph., 1997

Steering Image Generation with Wavelet Based Perceptual Metric.
Comput. Graph. Forum, 1997

Wavelet-based multiresolutional representation of computational field simulation datasets.
Proceedings of the 8th IEEE Visualization Conference, 1997

A comparison of normal estimation schemes.
Proceedings of the 8th IEEE Visualization Conference, 1997

1996
Reconstruction Error Characterization and Control: A Sampling Theory Approach.
IEEE Trans. Vis. Comput. Graph., 1996

Classification and Local Error Estimation of Interpolation and Derivative Filters for Volume Rendering.
Proceedings of the Proceeding of the 1996 Symposium on Volume Visualization, 1996

1995
Data-parallel, volume-rendering algorithms.
Vis. Comput., 1995

Spatial Domain Characterization and Control of Reconstruction Errors.
Proceedings of the Rendering Techniques '95, 1995

1993
Efficient feed-forward volume rendering techniques for vector and parallel processors.
Proceedings of the Proceedings Supercomputing '93, 1993


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