Raffaele A. Calogero

Orcid: 0000-0002-2848-628X

Affiliations:
  • University of Turin, Bioinformatics and Genomics Unit, Italy


According to our database1, Raffaele A. Calogero authored at least 28 papers between 1998 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2024
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.
BMC Bioinform., December, 2024

2023
CONNECTOR, fitting and clustering of longitudinal data to reveal a new risk stratification system.
Bioinform., May, 2023

2021
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service.
BMC Bioinform., 2021

2019
A computational approach based on the colored Petri net formalism for studying multiple sclerosis.
BMC Bioinform., December, 2019

BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics.
BMC Bioinform., 2019

Multiple Sclerosis Disease: A Computational Approach for Investigating Its Drug Interactions.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018
Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.
BMC Bioinform., 2018

SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.
Bioinform., 2018

ParallelHashClone: A Parallel Implementation of HashClone Suite for Clonality Assessment from NGS Data.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

2017
HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data.
BMC Bioinform., 2017

2015
A versatile mathematical work-flow to explore how Cancer Stem Cell fate influences tumor progression.
BMC Syst. Biol., 2015

Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis.
BMC Bioinform., 2015

2014
Chimera: a Bioconductor package for secondary analysis of fusion products.
Bioinform., 2014

2013
Multi-level model for the investigation of oncoantigen-driven vaccination effect.
BMC Bioinform., 2013

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?
BMC Bioinform., 2013

2012
Digging in the RNA-seq Garbage: Evaluating the Characteristics of Unmapped RNA-seq Reads in Normal Tissues.
Proceedings of the Sixth International Conference on Complex, 2012

2011
Mathematical Approach to Predict the Drug Effects on Cancer Stem Cell Models.
Proceedings of the Second International Workshop on Interactions between Computer Science and Biology, 2011

Cancer stem cell based adjuvant for oncoantingen-driven vaccination.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
Gene Ontology Rewritten for Computing Gene Functional Similarity.
Proceedings of the CISIS 2010, 2010

2009
Genome-Wide Search for Splicing Defects Associated with Amyotrophic Lateral Sclerosis (ALS).
Proceedings of the 2009 International Conference on Complex, 2009

2007
Kohonen neural networks and genetic classification.
Math. Comput. Model., 2007

Cross platform microarray analysis for robust identification of differentially expressed genes.
BMC Bioinform., 2007

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.
Bioinform., 2007

2005
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention.
BMC Bioinform., 2005

2004
RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets.
Bioinform., 2004

A computational search for box C/D snoRNA genes in the <i>Drosophila melanogaster</i> genome.
Bioinform., 2004

1998
VIRTLAB: a virtual molecular biology laboratory.
Bioinform., 1998

STRIRED: graphical analysis of string repeats.
Bioinform., 1998


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