Rafael S. Costa

According to our database, Rafael S. Costa authored at least 23 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

TriSig: Evaluating the statistical significance of triclusters.

Leonardo Alexandre, Rafael S. Costa, Rui Henriques

Pattern Recognit., 2024

Integrating Statistical Significance and Discriminative Power in Pattern Discovery.

Leonardo Alexandre, Rafael S. Costa, Rui Henriques

CoRR, 2024

2023

SBML2HYB: a Python interface for SBML compatible hybrid modeling.

José Pinto, Rafael S. Costa, Leonardo Alexandre, João Ramos, Rui Oliveira

Bioinform., January, 2023

TriSig: Assessing the statistical significance of triclusters.

Leonardo Alexandre, Rafael S. Costa, Rui Henriques

CoRR, 2023

2022

Scaling pattern mining through non-overlapping variable partitioning.

Leonardo Alexandre, Rafael S. Costa, Rui Henriques

CoRR, 2022

IPOscore: An interactive web-based platform for postoperative surgical complications analysis and prediction in the oncology domain.

Hugo Mochão, Daniel Gonçalves, Leonardo Alexandre, Carolina Castro, Duarte Valério, Pedro Barahona, Daniel Moreira-Gonçalves, Paulo Matos da Costa, Rui Henriques, Lucio Lara-Santos, Rafael S. Costa

Comput. Methods Programs Biomed., 2022

A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks.

José Pinto, Mykaella Mestre, J. Ramos, Rafael S. Costa, Gerald Striedner, Rui Oliveira

Comput. Chem. Eng., 2022

Enrichment analysis on regulatory subspaces: A novel direction for the superior description of cellular responses to SARS-CoV-2.

Pedro Rodrigues, Rafael S. Costa, Rui Henriques

Comput. Biol. Medicine, 2022

Context-situated visualization of biclusters to aid decisions: going beyond subspaces with parallel coordinates.

Daniel Gonçalves, Rafael S. Costa, Rui Henriques

Proceedings of the AVI 2022: International Conference on Advanced Visual Interfaces, Frascati, Rome, Italy, June 6, 2022

2021

Mining Pre-Surgical Patterns Able to Discriminate Post-Surgical Outcomes in the Oncological Domain.

Leonardo Alexandre, Rafael S. Costa, Lucio Lara-Santos, Rui Henriques

IEEE J. Biomed. Health Informatics, 2021

On the predictability of postoperative complications for cancer patients: a Portuguese cohort study.

Daniel Gonçalves, Rui Henriques, Lucio Lara-Santos, Rafael S. Costa

BMC Medical Informatics Decis. Mak., 2021

DI2: prior-free and multi-item discretization ofbiomedical data and its applications.

Leonardo Alexandre, Rafael S. Costa, Rui Henriques

CoRR, 2021

DI2: prior-free and multi-item discretization of biological data and its applications.

Leonardo Alexandre, Rafael S. Costa, Rui Henriques

BMC Bioinform., 2021

2020

KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.

Hugo Mochão, Pedro Barahona, Rafael S. Costa

Database J. Biol. Databases Curation, 2020

2016

Toward Community Standards and Software for Whole-Cell Modeling.

Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber

IEEE Trans. Biomed. Eng., 2016

2014

Identifying IIR filter coefficients using particle swarm optimization with application to reconstruction of missing cardiovascular signals.

András Hartmann, João Miranda Lemos, Rafael S. Costa, Susana Vinga

Eng. Appl. Artif. Intell., 2014

KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems.

Rafael S. Costa, André Veríssimo, Susana Vinga

BMC Syst. Biol., 2014

Exploring the Cellular Objective in Flux Balance Constraint-Based Models.

Rafael S. Costa, Son Nguyen, András Hartmann, Susana Vinga

Proceedings of the Computational Methods in Systems Biology, 2014

2012

Multi-level Dynamic Modeling in Biological Systems - Application of Hybrid Petri Nets to Network Simulation.

Rafael S. Costa, Daniel Machado, Ana Rute Neves, Susana Vinga

Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2010

Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations.

Rafael S. Costa, Daniel Machado, Isabel Rocha, Eugénio C. Ferreira

Biosyst., 2010

Model Transformation of Metabolic Networks using a Petri Net Based Framework.

Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira

Proceedings of the Workshops of the 31st International Conference on Application and Theory of Petri Nets and Other Models of Concurrency (PETRI NETS 2010) and of the 10th International Conference on Application of Concurrency to System Design (ACSD 2010), 2010

2009

A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems.

Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira

Proceedings of the Distributed Computing, 2009

Large Scale Dynamic Model Reconstruction for the Central Carbon Metabolism of Escherichia coli .

Rafael S. Costa, Daniel Machado, Isabel Rocha, Eugénio C. Ferreira

Proceedings of the Distributed Computing, 2009