Rafael A. Irizarry

According to our database, Rafael A. Irizarry authored at least 33 papers between 1998 and 2016.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2016

A Guide to Teaching Data Science.

Stephanie C. Hicks, Rafael A. Irizarry

CoRR, 2016

2015

A multi-omic analysis of human naïve CD4+ T cells.

Christopher J. Mitchell, Derese Getnet, Min Sik Kim, Srinivas Manda Srikanth, Praveen Kumar, Tai-Chung Huang, Sneha M. Pinto, Nirujogi Raja Sekhar, Mio Iwasaki, Patrick G. Shaw, Xinyan Wu, Jun Zhong, Raghothama Chaerkady, Arivusudar Marimuthu, Babylakshmi Muthusamy, Nandini A. Sahasrabuddhe, Rajesh Raju, Caitlyn Bowman, Ludmila V. Danilova, Jevon Cutler, Dhanashree S. Kelkar, Charles G. Drake, T. S. Keshava Prasad, Luigi Marchionni, Peter N. Murakami, Alan F. Scott, Leming Shi, Jean Thierry-Mieg, Danielle Thierry-Mieg, Rafael A. Irizarry, Leslie Cope, Yasushi Ishihama, Charles Wang, Harsha Gowda, Akhilesh Pandey

BMC Syst. Biol., 2015

2014

The Gene Expression Barcode 3.0: improved data processing and mining tools.

Matthew N. McCall, Harris A. Jaffee, Susan J. Zelisko, Neeraj Sinha, Guido J. E. K. Hooiveld, Rafael A. Irizarry, Michael J. Zilliox

Nucleic Acids Res., 2014

KRLMM: an adaptive genotype calling method for common and low frequency variants.

Ruijie Liu, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie

BMC Bioinform., 2014

Visualization and probability-based scoring of structural variants within repetitive sequences.

Eitan Halper-Stromberg, Jared Steranka, Kathleen H. Burns, Sarven Sabunciyan, Rafael A. Irizarry

Bioinform., 2014

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

Martin J. Aryee, Andrew E. Jaffe, Héctor Corrada Bravo, Christine Ladd-Acosta, Andrew P. Feinberg, Kasper D. Hansen, Rafael A. Irizarry

Bioinform., 2014

Context Aware Group Nearest Shrunken Centroids in Large-Scale Genomic Studies.

Juemin Yang, Fang Han, Rafael A. Irizarry, Han Liu

Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics, 2014

2013

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data.

George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji

Bioinform., 2013

2012

The partitioned LASSO-patternsearch algorithm with application to gene expression data.

Weiliang Shi, Grace Wahba, Rafael A. Irizarry, Héctor Corrada Bravo, Stephen J. Wright

BMC Bioinform., 2012

Gene expression anti-profiles as a basis for accurate universal cancer signatures.

Héctor Corrada Bravo, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek

BMC Bioinform., 2012

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model.

Kristof De Beuf, Joachim M. De Schrijver, Olivier Thas, Wim Van Criekinge, Rafael A. Irizarry, Lieven Clement

BMC Bioinform., 2012

fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays.

Matthew N. McCall, Harris A. Jaffee, Rafael A. Irizarry

Bioinform., 2012

2011

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes.

Matthew N. McCall, Karan Uppal, Harris A. Jaffee, Michael J. Zilliox, Rafael A. Irizarry

Nucleic Acids Res., 2011

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips.

Matthew E. Ritchie, Ruijie Liu, Benilton S. Carvalho, Rafael A. Irizarry

BMC Bioinform., 2011

Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples.

Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry

BMC Bioinform., 2011

Thawing Frozen Robust Multi-array Analysis (fRMA).

Matthew N. McCall, Rafael A. Irizarry

BMC Bioinform., 2011

Performance assessment of copy number microarray platforms using a spike-in experiment.

Eitan Halper-Stromberg, Laurence Frelin, Ingo Ruczinski, Robert B. Scharpf, Chunfa Jie, Benilton S. Carvalho, Haiping Hao, Kurt N. Hetrick, Anne Jedlicka, Amanda Dziedzic, Kim Doheny, Alan F. Scott, Steve Baylin, Jonathan Pevsner, Forrest Spencer, Rafael A. Irizarry

Bioinform., 2011

2010

Quantifying uncertainty in genotype calls.

Benilton S. Carvalho, Thomas A. Louis, Rafael A. Irizarry

Bioinform., 2010

A framework for oligonucleotide microarray preprocessing.

Benilton S. Carvalho, Rafael A. Irizarry

Bioinform., 2010

2009

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.

Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry

Bioinform., 2009

2008

Estimating Genome-Wide Copy Number Using Allele-Specific Mixture Models.

Wenyi Wang, Benilton S. Carvalho, Nathaniel D. Miller, Jonathan Pevsner, Aravinda Chakravarti, Rafael A. Irizarry

J. Comput. Biol., 2008

Estimation and assessment of raw copy numbers at the single locus level.

Henrik Bengtsson, Rafael A. Irizarry, Benilton S. Carvalho, Terence P. Speed

Bioinform., 2008

2006

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma

BMC Bioinform., 2006

A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.

Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Tripputi, Mark W. Porter

BMC Bioinform., 2006

High-resolution spatial normalization for microarrays containing embedded technical replicates.

Daniel S. Yuan, Rafael A. Irizarry

Bioinform., 2006

Comparison of Affymetrix GeneChip expression measures.

Rafael A. Irizarry, Zhijin Wu, Harris A. Jaffee

Bioinform., 2006

2005

Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide Arrays.

Zhijin Wu, Rafael A. Irizarry

J. Comput. Biol., 2005

2004

affy - analysis of Affymetrix GeneChip data at the probe level.

Laurent Gautier, Leslie Cope, Benjamin M. Bolstad, Rafael A. Irizarry

Bioinform., 2004

A benchmark for Affymetrix GeneChip expression measures.

Leslie Cope, Rafael A. Irizarry, Harris A. Jaffee, Zhijin Wu, Terence P. Speed

Bioinform., 2004

2003

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Benjamin M. Bolstad, Rafael A. Irizarry, Magnus Åstrand, Terence P. Speed

Bioinform., 2003

2000

Some wavelet-based analyses of Markov chain data.

David R. Brillinger, Pedro Alberto Morettin, Rafael A. Irizarry, Chang Chiann

Signal Process., 2000

1998

An investigation of the second- and higher-order spectra of music.

David R. Brillinger, Rafael A. Irizarry

Signal Process., 1998

The Additive Sinusoidal Plus Residual Model: A Statistical Analysis.

Rafael A. Irizarry

Proceedings of the 1998 International Computer Music Conference, 1998