Radka Svobodová Vareková
Orcid: 0000-0002-3840-8760Affiliations:
- Masaryk University Brno, Czech Republic
According to our database1,
Radka Svobodová Vareková
authored at least 49 papers
between 2006 and 2023.
Collaborative distances:
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Online presence:
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on orcid.org
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Bibliography
2023
Nucleic Acids Res., July, 2023
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations.
Nucleic Acids Res., July, 2023
2022
Nucleic Acids Res., 2022
2021
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures.
Nucleic Acids Res., 2021
Correction to: Optimized SQE atomic charges for peptides accessible via a web application.
J. Cheminformatics, 2021
J. Cheminformatics, 2021
Bioinform., 2021
2020
BinaryCIF and CIFTools - Lightweight, efficient and extensible macromolecular data management.
PLoS Comput. Biol., 2020
Nucleic Acids Res., 2020
Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges.
Nucleic Acids Res., 2020
Nucleic Acids Res., 2020
2019
Bioinform., 2019
2018
Nucleic Acids Res., 2018
MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update).
Nucleic Acids Res., 2018
Proceedings of the 14th IEEE International Conference on e-Science, 2018
2017
F1000Research, 2017
2016
Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Res., 2016
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges.
J. Cheminformatics, 2016
2015
ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank.
Nucleic Acids Res., 2015
PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank.
Nucleic Acids Res., 2015
How Does the Methodology of 3D Structure Preparation Influence the Quality of p<i>K</i><sub>a</sub> Prediction?
J. Chem. Inf. Model., 2015
AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules.
J. Cheminformatics, 2015
High-quality and universal empirical atomic charges for chemoinformatics applications.
J. Cheminformatics, 2015
2014
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes.
Nucleic Acids Res., 2014
J. Cheminformatics, 2014
2013
Rapid Calculation of Accurate Atomic Charges for Proteins via the Electronegativity Equalization Method.
J. Chem. Inf. Model., 2013
J. Cheminformatics, 2013
2012
Charge Profile Analysis Reveals That Activation of Pro-apoptotic Regulators Bax and Bak Relies on Charge Transfer Mediated Allosteric Regulation.
PLoS Comput. Biol., 2012
Nucleic Acids Res., 2012
J. Chem. Inf. Model., 2012
J. Cheminformatics, 2012
SiteBinder - an improved approach for comparing multiple protein structural motifs. Case studies on biologically important motifs.
J. Cheminformatics, 2012
Searching for tunnels of proteins - comparison of approaches and available software tools.
J. Cheminformatics, 2012
How the methodology of 3D structure preparation influences the quality of QSPR models?
J. Cheminformatics, 2012
2011
Predicting p<i>K</i><sub>a</sub> Values of Substituted Phenols from Atomic Charges: Comparison of Different Quantum Mechanical Methods and Charge Distribution Schemes.
J. Chem. Inf. Model., 2011
QSPR designer - a program to design and evaluate QSPR models. Case study on pK<sub>a</sub> prediction.
J. Cheminformatics, 2011
2009
Software news and updates electronegativity equalization method: Parameterization and validation for organic molecules using the Merz-Kollman-Singh charge distribution scheme.
J. Comput. Chem., 2009
2008
J. Chem. Inf. Model., 2008
Comput. Methods Programs Biomed., 2008
2007
Identification of Potential Small Molecule Peptidomimetics Similar to Motifs in Proteins.
J. Chem. Inf. Model., 2007
2006
Optimized and parallelized implementation of the electronegativity equalization method and the atom-bond electronegativity equalization method.
J. Comput. Chem., 2006