Radhakrishnan Mahadevan

According to our database, Radhakrishnan Mahadevan authored at least 23 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

Nonlinear programming reformulation of dynamic flux balance analysis models.

Rafael D. de Oliveira, Galo A. C. Le Roux, Radhakrishnan Mahadevan

Comput. Chem. Eng., February, 2023

2022

KinMod database: a tool for investigating metabolic regulation.

Kiandokht Haddadi, Rana Ahmed Barghout, Radhakrishnan Mahadevan

Database J. Biol. Databases Curation, 2022

2021

Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism.

Leo Zhu, William Pei, Ines Thiele, Radhakrishnan Mahadevan

PLoS Comput. Biol., 2021

A gap-filling algorithm for prediction of metabolic interactions in microbial communities.

Dafni Giannari, Cleo Hanchen Ho, Radhakrishnan Mahadevan

PLoS Comput. Biol., 2021

Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations.

Leo Zhu, William Pei, Patricia DiCiano, Bruna Brands, Christine M. Wickens, Bernard Le Foll, Bronsen Kwong, Megha Parashar, Atchu Sivananthan, Radhakrishnan Mahadevan

Comput. Chem. Eng., 2021

Enzyme Activity Prediction of Sequence Variants on Novel Substrates using Improved Substrate Encodings and Convolutional Pooling.

Zhiqing Xu, Jinghao Wu, Yun S. Song, Radhakrishnan Mahadevan

Proceedings of the Machine Learning in Computational Biology Meeting, 2021

2020

Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks.

Steffen Klamt, Radhakrishnan Mahadevan, Axel von Kamp

BMC Bioinform., 2020

2019

A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology.

Masood Khaksar Toroghi, William R. Cluett, Radhakrishnan Mahadevan

Comput. Chem. Eng., 2019

A scalable method for parameter identification in kinetic models of metabolism using steady-state data.

Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan

Bioinform., 2019

AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution.

Kevin Correia, Shi M. Yu, Radhakrishnan Mahadevan

Database J. Biol. Databases Curation, 2019

2018

Model-based design of bistable cell factories for metabolic engineering.

Shyam Srinivasan, William R. Cluett, Radhakrishnan Mahadevan

Bioinform., 2018

2017

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.

Steffen Klamt, Georg Regensburger, Matthias P. Gerstl, Christian Jungreuthmayer, Stefan Schuster, Radhakrishnan Mahadevan, Jürgen Zanghellini, Stefan Müller

PLoS Comput. Biol., 2017

2015

Genome-scale strain designs based on regulatory minimal cut sets.

Radhakrishnan Mahadevan, Axel von Kamp, Steffen Klamt

Bioinform., 2015

2010

Characterizing the Metabolism of <i>Dehalococcoides</i> with a Constraint-Based Model.

M. Ahsanul Islam, Elizabeth A. Edwards, Radhakrishnan Mahadevan

PLoS Comput. Biol., 2010

Designing experiments from noisy metabolomics data to refine constraint-based models.

Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett

Proceedings of the American Control Conference, 2010

2009

Genome-scale constraint-based modeling of Geobacter metallireducens.

Jun Sun, Bahareh Sayyar, Jessica E. Butler, Priti Pharkya, Tom Fahland, Iman Famili, Christophe H. Schilling, Derek R. Lovley, Radhakrishnan Mahadevan

BMC Syst. Biol., 2009

2008

Computational and Experimental Analysis of Redundancy in the Central Metabolism of <i>Geobacter sulfurreducens</i>.

Daniel Segura, Radhakrishnan Mahadevan, Katy Juarez, Derek R. Lovley

PLoS Comput. Biol., 2008

A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks.

Laurence Yang, Radhakrishnan Mahadevan, William R. Cluett

Comput. Chem. Eng., 2008

Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, A Genome-Wide Database of Regulatory Sequence Elements of Geobacter sulfurreducens.

Julia Krushkal, Marko Puljic, Bin Yan, Jose F. Barbe, Radhakrishnan Mahadevan, Bradley Postier, Regina A. O'Neil, Gemma Reguera, Ching Leang, Laurie N. DiDonato, Cinthia Núñez, Barbara A. Methé, Ronald M. Adkins, Derek R. Lovley

Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

2006

Optimal genetic manipulations in batch bioreactor control.

Kapil G. Gadkar, Radhakrishnan Mahadevan, Francis J. Doyle III

Autom., 2006

2005

Batch control of genetic alterations for optimal metabolic engineering.

Kapil G. Gadkar, Radhakrishnan Mahadevan, Francis J. Doyle III

Proceedings of the American Control Conference, 2005

2004

A partial flatness approach to nonlinear moving horizon estimation.

Radhakrishnan Mahadevan, Francis J. Doyle

Proceedings of the 2004 American Control Conference, 2004

1999

Nonlinear nonsquare control of a continuous bioreactor using flat outputs.

Radhakrishnan Mahadevan, Francis J. Doyle

Proceedings of the 5th European Control Conference, 1999