R. Henrik Nilsson

According to our database, R. Henrik Nilsson authored at least 11 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

EUKARYOME: the rRNA gene reference database for identification of all eukaryotes.

Leho Tedersoo, Mahdieh S. Hosseyni Moghaddam, Vladimir Mikryukov, Ali Hakimzadeh, Mohammad Bahram, R. Henrik Nilsson, Iryna Yatsiuk, Stefan Geisen, Arne Schwelm, Kasia Piwosz, Marko Prous, Sirje Sildever, Dominika Chmolowska, Sonja Rueckert, Pavel Skaloud, Peeter Laas, Marco Tines, Jae-Ho Jung, Ji Hye Choi, Saad Alkahtani, Sten Anslan

Database J. Biol. Databases Curation, January, 2024

2019

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications.

R. Henrik Nilsson, Karl-Henrik Larsson, Andy F. S. Taylor, Johan Bengtsson-Palme, Thomas S. Jeppesen, Dmitry Schigel, Peter Kennedy, Kathryn Picard, Frank Oliver Glöckner, Leho Tedersoo, Irja Saar, Urmas Kõljalg, Kessy Abarenkov

Nucleic Acids Res., 2019

2018

Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.

Johan Bengtsson-Palme, Rodney T. Richardson, Marco Meola, Christian Wurzbacher, Émilie D. Tremblay, Kaisa Thorell, Kärt Kanger, K. Martin Eriksson, Guillaume J. Bilodeau, Reed M. Johnson, Martin Hartmann, R. Henrik Nilsson

Bioinform., 2018

2016

Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2.

Johan Bengtsson-Palme, Kaisa Thorell, Christian Wurzbacher, Åsa Sjöling, R. Henrik Nilsson

Ecol. Informatics, 2016

Unbiased probabilistic taxonomic classification for DNA barcoding.

Panu Somervuo, Sonja Koskela, Juho Pennanen, R. Henrik Nilsson, Otso Ovaskainen

Bioinform., 2016

2014

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi.

Conrad L. Schoch, Barbara Robbertse, Vincent Robert, Duong Vu, Gianluigi Cardinali, Laszlo Irinyi, Wieland Meyer, R. Henrik Nilsson, Karen Hughes, Andrew N. Miller, Paul M. Kirk, Kessy Abarenkov, M. Catherine Aime, Hiran A. Ariyawansa, Martin Bidartondo, Teun Boekhout, Bart Buyck, Qing Cai, Jie Chen, Ana Crespo, Pedro W. Crous, Ulrike Damm, Z. Wilhelm De Beer, Bryn T. M. Dentinger, Pradeep K. Divakar, Margarita Dueñas, Nicolas Feau, Katerina Fliegerova, Miguel A. García, Zai-Wei Ge, Gareth W. Griffith, Johannes Z. Groenewald, Marizeth Groenewald, Martin Grube, Marieka Gryzenhout, Cécile Gueidan, Liangdong Guo, Sarah Hambleton, Richard C. Hamelin, Karen Hansen, Valérie Hofstetter, Seung-Beom Hong, Jos Houbraken, Kevin D. Hyde, Patrik Inderbitzin, Peter R. Johnston, Samantha C. Karunarathna, Urmas Kõljalg, Gábor M. Kovács, Ekaphan Kraichak, Krisztina Krizsan, Cletus P. Kurtzman, Karl-Henrik Larsson, Steven Leavitt, Peter M. Letcher, Kare Liimatainen, Jian-Kui Liu, D. Jean Lodge, Janet Jennifer Luangsa-ard, H. Thorsten Lumbsch, Sajeewa S. N. Maharachchikumbura, Dimuthu Manamgoda, María P. Martín, Andrew M. Minnis, Jean-Marc Moncalvo, Giuseppina Mulè, Karen K. Nakasone, Tuula Niskanen, Ibai Olariaga, Tamás Papp, Tamás Petkovits, Raquel Pino-Bodas, Martha J. Powell, Huzefa A. Raja, Dirk Redecker, J. M. Sarmiento-Ramirez, Keith A. Seifert, Bhushan Shrestha, Soili Stenroos, Benjamin Stielow, Sung-Oui Suh, Kazuaki Tanaka, Leho Tedersoo, M. Teresa Telleria, Dhanushka Udayanga, Wendy A. Untereiner, Javier Diéguez Uribeondo, Krishna V. Subbarao, Csaba Vágvölgyi, Cobus M. Visagie, Kerstin Voigt, Donald M. Walker, Bevan S. Weir, Michael Weiß, Nalin N. Wijayawardene, Michael J. Wingfield, J. P. Xu, Zhu L. Yang, Ning Zhang, Wen-Ying Zhuang, Scott Federhen

Database J. Biol. Databases Curation, 2014

2011

DivBayes and SubT: exploring species diversification using Bayesian statistics.

Martin Ryberg, R. Henrik Nilsson, P. Brandon Matheny

Bioinform., 2011

2009

A software pipeline for processing and identification of fungal ITS sequences.

R. Henrik Nilsson, Gunilla Bok, Martin Ryberg, Erik Kristiansson, Nils Hallenberg

Source Code Biol. Medicine, 2009

2005

Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi.

R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, Karl-Henrik Larsson

BMC Bioinform., 2005

2004

galaxieEST: addressing EST identity through automated phylogenetic analysis.

R. Henrik Nilsson, Balaji Rajashekar, Karl-Henrik Larsson, Björn M. Ursing

BMC Bioinform., 2004

galaxie-CGI scripts for sequence identification through automated phylogenetic analysis.

R. Henrik Nilsson, Karl-Henrik Larsson, Björn M. Ursing

Bioinform., 2004