R. Gonzalo Parra

According to our database, R. Gonzalo Parra authored at least 14 papers between 2012 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

PDBe-KB: collaboratively defining the biological context of structural data.

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2022

2021

FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.

Atilio O. Rausch, Maria I Freiberger, Cesar O. Leonetti, Diego M. Luna, Leandro G. Radusky, Peter G. Wolynes, Diego U. Ferreiro, R. Gonzalo Parra

Bioinform., 2021

2019

PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes.

Nikolaos Papadopoulos, R. Gonzalo Parra, Johannes Söding

Bioinform., 2019

2018

Reflections on a journey: a retrospective of the ISCB Student Council symposium series.

Mehedi Hassan, Aishwarya Alex Namasivayam, Dan F. DeBlasio, Nazeefa Fatima, Benjamin Siranosian, R. Gonzalo Parra, Bart Cuypers, Sayane Shome, Alexander Miguel Monzon, Julien Fumey, Farzana Rahman

BMC Bioinform., 2018

2017

Inferring repeat-protein energetics from evolutionary information.

Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro

PLoS Comput. Biol., 2017

2016

Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015.

Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic

BMC Bioinform., February, 2016

Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics.

R. Gonzalo Parra, Nicholas P. Schafer, Leandro G. Radusky, Min-Yeh Tsai, A. Brenda Guzovsky, Peter G. Wolynes, Diego U. Ferreiro

Nucleic Acids Res., 2016

INSECT 2.0: a web-server for genome-wide <i>cis</i>-regulatory modules prediction.

R. Gonzalo Parra, Cristian Oscar Rohr, Daniel Koile, Carolina Perez-Castro, Patricio Yankilevich

Bioinform., 2016

2015

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family.

R. Gonzalo Parra, Rocío Espada, Nina Verstraete, Diego U. Ferreiro

PLoS Comput. Biol., 2015

Capturing coevolutionary signals inrepeat proteins.

Rocío Espada, R. Gonzalo Parra, Thierry Mora, Aleksandra M. Walczak, Diego U. Ferreiro

BMC Bioinform., 2015

2014

The Upside of Failure: How Regional Student Groups Learn from Their Mistakes.

Tarun Mishra, R. Gonzalo Parra, Thomas Abeel

PLoS Comput. Biol., 2014

RepeatsDB: a database of tandem repeat protein structures.

Tomás Di Domenico, Emilio Potenza, Ian Walsh, R. Gonzalo Parra, Manuel Giollo, Giovanni Minervini, Damiano Piovesan, Awais Ihsan, Carlo Ferrari, Andrey V. Kajava, Silvio C. E. Tosatto

Nucleic Acids Res., 2014

2013

INSECT: IN-silico SEarch for Co-occurring Transcription factors.

Cristian Oscar Rohr, R. Gonzalo Parra, Patricio Yankilevich, Carolina Perez-Castro

Bioinform., 2013

2012

Protein frustratometer: a tool to localize energetic frustration in protein molecules.

Michael Jenik, R. Gonzalo Parra, Leandro G. Radusky, Adrian Gustavo Turjanski, Peter G. Wolynes, Diego U. Ferreiro

Nucleic Acids Res., 2012