Qinghua Cui

According to our database, Qinghua Cui authored at least 50 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

FreeCG: Free the Design Space of Clebsch-Gordan Transform for Machine Learning Force Fields.

Shihao Shao, Haoran Geng, Zun Wang, Qinghua Cui

CoRR, 2024

2023

A fusion framework of deep learning and machine learning for predicting sgRNA cleavage efficiency.

Yu Liu, Rui Fan, Jingkun Yi, Qinghua Cui, Chunmei Cui

Comput. Biol. Medicine, October, 2023

Defining the single base importance of human mRNAs and lncRNAs.

Rui Fan, Xiangwen Ji, Jianwei Li, Qinghua Cui, Chunmei Cui

Briefings Bioinform., September, 2023

Solution Structures of an Electrical Transmission Line Model with Bifurcation and Chaos in Hamiltonian Dynamics.

Jianming Qi, Qinghua Cui, Le Zhang, Yiqun Sun

Int. J. Bifurc. Chaos, July, 2023

Deciphering gene contributions and etiologies of somatic mutational signatures of cancer.

Xiangwen Ji, Edwin Wang, Qinghua Cui

Briefings Bioinform., March, 2023

MicroRNA-Disease Network Analysis Repurposes Methotrexate for the Treatment of Abdominal Aortic Aneurysm in Mice.

Yicong Shen, Yuanxu Gao, Jiangcheng Shi, Zhou Huang, Rongbo Dai, Yi Fu, Yuan Zhou, Wei Kong, Qinghua Cui

Genom. Proteom. Bioinform., 2023

Global Features are All You Need for Image Retrieval and Reranking.

Shihao Shao, Kaifeng Chen, Arjun Karpur, Qinghua Cui, André Araújo, Bingyi Cao

Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

2022

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.

Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zhenglin Du, Yinying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Peilin Jia, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Tong Jin, Yuansheng Zhang, Dong Zou, Qiang Du, Changrui Feng, Lina Ma, Sisi Zhang, Anke Wang, Lili Dong, Yanqing Wang, Wan Liu, Xing Yan, Yunchao Ling, Zhihua Zhou, Wang Kang, Tao Zhang, Shuai Ma, Haoteng Yan, Zunpeng Liu, Zejun Ji, Yusheng Cai, Si Wang, Moshi Song, Jie Ren, Qi Zhou, Jing Qu, Weiqi Zhang, Guanghui Liu, Xu Chen, Tingting Chen, Yanling Sun, Caixia Yu, Bixia Tang, Junwei Zhu, Shuang Zhai, Yubin Sun, Qiancheng Chen, Xiaoyu Yang, Xin Zhang, Zhengqi Sang, Yonggang Wang, Yilin Zhao, Huanxin Chen, Li Lan, Yingke Ma, Yaokai Jia, Xinchang Zheng, Meili Chen, Ming Chen, Guangyi Niu, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Mochen Zhang, Guoliang Wang, Lizhi Yi, Wei Zhao, Song Wu, Zhuang Xiong, Rujiao Li, Zheng Gong, Lin Liu, Zhao Li, Qianpeng Li, Sicheng Luo, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Yanyan Li, Fei Yang, Mengwei Li, Zhaohua Li, Dongmei Tian, Xiaonan Liu, Cuiping Li, Xufei Teng, Shuhui Song, Yang Zhang, Ruru Chen, Rongqin Zhang, Feng Xu, Yifan Wang, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yungang He, Zhen Yang, Lun Li, Na Li, Ying Cui, Guangya Duan, Gangao Wu, Tianhao Huang, Enhui Jin, Hailong Kang, Zhonghuang Wang, Hua Chen, Mingkun Li, Wanshan Ning, Yu Xue, Yanhu Liu, Qijun Zhou, Xingyan Liu, Longlong Zhang, Bingyu Mao, Shihua Zhang, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Haichun Jing, Yitong Pan, Leisheng Shi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Dan Liu, Chi Zhang, Zheng Zhao, Tao Jiang, Wanying Wu, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Shaofeng Lin, Chuijie Liu, Anyuan Guo, Hao Yuan, Tianhan Su, Yong E. Zhang, Yincong Zhou, Guoji Guo, Shanshan Fu, Xiaodan Tan, Weizhi Zhang, Mei Luo, Yubin Xie, Chenwei Wang, Xingyu Liao, Xin Gao, Jianxin Wang, Guiyan Xie, Chunhui Yuan, Feng Tian, Dechang Yang, Ge Gao, Dachao Tang, Wenyi Wu, Yujie Gou, Cheng Han, Qinghua Cui, Xiangshang Li, Chuan-Yun Li, Xiaotong Luo

Nucleic Acids Res., 2022

1st Place Solution in Google Universal Images Embedding.

Shihao Shao, Qinghua Cui

CoRR, 2022

2021

AGTR2, One Possible Novel Key Gene for the Entry of SARS-CoV-2 Into Human Cells.

Chunmei Cui, Chuanbo Huang, Wanlu Zhou, Xiangwen Ji, Fenghong Zhang, Liang Wang, Yuan Zhou, Qinghua Cui

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.

Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo

Nucleic Acids Res., 2021

A layer-stress learning framework universally augments deep neural network tasks.

Shihao Shao, Yong Liu, Qinghua Cui

CoRR, 2021

Comparative analysis of aneurysm subtypes associated genes based on protein-protein interaction network.

Ruya Sun, Yuan Zhou, Qinghua Cui

BMC Bioinform., 2021

Toward comprehensive functional analysis of gene lists weighted by gene essentiality scores.

Rui Fan, Qinghua Cui

Bioinform., 2021

Defining the functional divergence of orthologous genes between human and mouse in the context of miRNA regulation.

Chunmei Cui, Yuan Zhou, Qinghua Cui

Briefings Bioinform., 2021

2020

m6Acorr: an online tool for the correction and comparison of m⁶A methylation profiles.

Jianwei Li, Yan Huang, Qinghua Cui, Yuan Zhou

BMC Bioinform., 2020

smORFunction: a tool for predicting functions of small open reading frames and microproteins.

Xiangwen Ji, Chunmei Cui, Qinghua Cui

BMC Bioinform., 2020

Annotation and curation of the causality information in LncRNADisease.

Kaiwen Jia, Yuanxu Gao, Jiangcheng Shi, Yuan Zhou, Yong Zhou, Qinghua Cui

Database J. Biol. Databases Curation, 2020

2019

TransmiR v2.0: an updated transcription factor-microRNA regulation database.

Zhan Tong, Qinghua Cui, Juan Wang, Yuan Zhou

Nucleic Acids Res., 2019

MISIM v2.0: a web server for inferring microRNA functional similarity based on microRNA-disease associations.

Jianwei Li, Shan Zhang, Yanping Wan, Yingshu Zhao, Jiangcheng Shi, Yuan Zhou, Qinghua Cui

Nucleic Acids Res., 2019

HMDD v3.0: a database for experimentally supported human microRNA-disease associations.

Zhou Huang, Jiangcheng Shi, Yuanxu Gao, Chunmei Cui, Shan Zhang, Jianwei Li, Yuan Zhou, Qinghua Cui

Nucleic Acids Res., 2019

LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases.

Zhenyu Bao, Zhen Yang, Zhou Huang, Yiran Zhou, Qinghua Cui, Dong Dong

Nucleic Acids Res., 2019

Combining network topology with transcriptomic data for identifying radiosensitive gene signatures.

Qinghua Cui, Tingting Sun, Zongyao Nie

J. Comput. Methods Sci. Eng., 2019

NmSEER V2.0: a prediction tool for 2′-O-methylation sites based on random forest and multi-encoding combination.

Yiran Zhou, Qinghua Cui, Yuan Zhou

BMC Bioinform., 2019

miES: predicting the essentiality of miRNAs with machine learning and sequence features.

Fei Song, Chunmei Cui, Lin Gao, Qinghua Cui

Bioinform., 2019

2018

TAM 2.0: tool for MicroRNA set analysis.

Jianwei Li, Xiaofen Han, Yanping Wan, Shan Zhang, Yingshu Zhao, Rui Fan, Qinghua Cui, Yuan Zhou

Nucleic Acids Res., 2018

Comparative Analysis of Human Genes Frequently and Occasionally Regulated by m⁶A Modification.

Yuan Zhou, Qinghua Cui

Genom. Proteom. Bioinform., 2018

PTMD: A Database of Human Disease-associated Post-translational Modifications.

Hao-Dong Xu, Yongbo Wang, Shaofeng Lin, Wankun Deng, Di Peng, Qinghua Cui, Yu Xue

Genom. Proteom. Bioinform., 2018

Identification and Analysis of Human Sex-biased MicroRNAs.

Chunmei Cui, Weili Yang, Jiangcheng Shi, Yong Zhou, Jichun Yang, Qinghua Cui, Yuan Zhou

Genom. Proteom. Bioinform., 2018

AGD: Aneurysm Gene Database.

Ruya Sun, Chunmei Cui, Yuan Zhou, Qinghua Cui

Database J. Biol. Databases Curation, 2018

Identification and analysis of the human sex-biased genes.

Sisi Guo, Yuan Zhou, Pan Zeng, Guoheng Xu, Guoqing Wang, Qinghua Cui

Briefings Bioinform., 2018

NmSEER: A Prediction Tool for 2'-O-Methylation (Nm) Sites Based on Random Forest.

Yiran Zhou, Qinghua Cui, Yuan Zhou

Proceedings of the Intelligent Computing Theories and Application, 2018

2017

An analysis of human microbe-disease associations.

Wei Ma, Lu Zhang, Pan Zeng, Chuanbo Huang, Jianwei Li, Bin Geng, Jichun Yang, Wei Kong, Xuezhong Zhou, Qinghua Cui

Briefings Bioinform., 2017

2015

PPUS: a web server to predict PUS-specific pseudouridine sites.

Yan-Hui Li, Gaigai Zhang, Qinghua Cui

Bioinform., 2015

Drug-Path: a database for drug-induced pathways.

Hui Zeng, Chengxiang Qiu, Qinghua Cui

Database J. Biol. Databases Curation, 2015

LncTar: a tool for predicting the RNA targets of long noncoding RNAs.

Jianwei Li, Wei Ma, Pan Zeng, Junyi Wang, Bin Geng, Jichun Yang, Qinghua Cui

Briefings Bioinform., 2015

2014

HMDD v2.0: a database for experimentally supported human microRNA and disease associations.

Yang Li, Chengxiang Qiu, Jian Tu, Bin Geng, Jichun Yang, Tianzi Jiang, Qinghua Cui

Nucleic Acids Res., 2014

2013

LncRNADisease: a database for long-non-coding RNA-associated diseases.

Geng Chen, Ziyun Wang, Dongqing Wang, Chengxiang Qiu, Mingxi Liu, Xing Chen, Qipeng Zhang, Guiying Yan, Qinghua Cui

Nucleic Acids Res., 2013

2012

SpliceDisease database: linking RNA splicing and disease.

Juan Wang, Jie Zhang, Kaibo Li, Wei Zhao, Qinghua Cui

Nucleic Acids Res., 2012

The relationship between rational drug design and drug side effects.

Juan Wang, Zhi-xin Li, Chengxiang Qiu, Dong Wang, Qinghua Cui

Briefings Bioinform., 2012

2011

miR2Gene: pattern discovery of single gene, multiple genes, and pathways by enrichment analysis of their microRNA regulators.

Chengxiang Qiu, Juan Wang, Qinghua Cui

BMC Syst. Biol., 2011

miREnvironment Database: providing a bridge for microRNAs, environmental factors and phenotypes.

Qingqing Yang, Chengxiang Qiu, Jie Yang, Qing Wu, Qinghua Cui

Bioinform., 2011

2010

TransmiR: a transcription factor-microRNA regulation database.

Juan Wang, Ming Lu, Chengxiang Qiu, Qinghua Cui

Nucleic Acids Res., 2010

microRNA evolution in a human transcription factor and microRNA regulatory network.

Chengxiang Qiu, Juan Wang, Pengying Yao, Edwin Wang, Qinghua Cui

BMC Syst. Biol., 2010

TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs.

Ming Lu, Bing Shi, Juan Wang, Qun Cao, Qinghua Cui

BMC Bioinform., 2010

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases.

Dong Wang, Juan Wang, Ming Lu, Fei Song, Qinghua Cui

Bioinform., 2010

2009

Protein evolution on a human signaling network.

Qinghua Cui, Enrico O. Purisima, Edwin Wang

BMC Syst. Biol., 2009

2005

Characterizing the dynamic connectivity between genes by variable parameter regression and Kalman filtering based on temporal gene expression data.

Qinghua Cui, Bing Liu, Tianzi Jiang, Songde Ma

Bioinform., 2005

2004

A combinational feature selection and ensemble neural network method for classification of gene expression data.

Bing Liu, Qinghua Cui, Tianzi Jiang, Songde Ma

BMC Bioinform., 2004

Esub8: A novel tool to predict protein subcellular localizations in eukaryotic organisms.

Qinghua Cui, Tianzi Jiang, Bing Liu, Songde Ma

BMC Bioinform., 2004