Qiangfeng Cliff Zhang

According to our database, Qiangfeng Cliff Zhang authored at least 18 papers between 2011 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

RNA Structural Dynamics Modulate EGFR-TKI Resistance Through Controlling <i>YRDC</i> Translation in NSCLC Cells.

Boyang Shi, Ke An, Yueqin Wang, Yuhan Fei, Caixia Guo, Qiangfeng Cliff Zhang, Yun-Gui Yang, Xin Tian, Quancheng Kan

Genom. Proteom. Bioinform., August, 2023

PrismNet: predicting protein-RNA interaction using <i>in vivo</i> RNA structural information.

Yiran Xu, Jianghui Zhu, Wenze Huang, Kui Xu, Rui Yang, Qiangfeng Cliff Zhang, Lei Sun

Nucleic Acids Res., July, 2023

2021

A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments.

Jing Gong, Kui Xu, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang

Nat. Mach. Intell., 2021

RASP: an atlas of transcriptome-wide RNA secondary structure probing data.

Pan Li, Xiaolin Zhou, Kui Xu, Qiangfeng Cliff Zhang

Nucleic Acids Res., 2021

VRmol: an integrative web-based virtual reality system to explore macromolecular structure.

Kui Xu, Nan Liu, Jingle Xu, Chunlong Guo, Lingyun Zhao, Hongwei Wang, Qiangfeng Cliff Zhang

Bioinform., 2021

2020

IRIS: A method for predicting in vivo RNA secondary structures using PARIS data.

Jianyu Zhou, Pan Li, Wanwen Zeng, Wenxiu Ma, Zhipeng Lu, Rui Jiang, Qiangfeng Cliff Zhang, Tao Jiang

Quant. Biol., 2020

Prediction and differential analysis of RNA secondary structure.

Bo Yuan, Yao Lu, Qiangfeng Cliff Zhang, Lin Hou

Quant. Biol., 2020

2019

A^2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes.

Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang

CoRR, 2019

A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes.

Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang

Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

2018

Advances and challenges towards the study of RNA-RNA interactions in a transcriptome-wide scale.

Jing Gong, Yanyan Ju, Di Shao, Qiangfeng Cliff Zhang

Quant. Biol., 2018

RISE: a database of RNA interactome from sequencing experiments.

Jing Gong, Di Shao, Kui Xu, Zhipeng Lu, Zhi John Lu, Yu-Cheng T. Yang, Qiangfeng Cliff Zhang

Nucleic Acids Res., 2018

2017

RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing.

Meiling Piao, Lei Sun, Qiangfeng Cliff Zhang

Genom. Proteom. Bioinform., 2017

Harnessing Big Data for Precision Medicine: Infrastructures and Applications.

Kun-Hsing Yu, Steven N. Hart, Rachel L. Goldfeder, Qiangfeng Cliff Zhang, Stephen C. J. Parker, Michael Snyder

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2014

PredHS: a web server for predicting protein-protein interaction hot spots by using structural neighborhood properties.

Lei Deng, Qiangfeng Cliff Zhang, Zhigang Chen, Yang Meng, Jihong Guan, Shuigeng Zhou

Nucleic Acids Res., 2014

2013

PrePPI: a structure-informed database of protein-protein interactions.

Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig

Nucleic Acids Res., 2013

Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties.

Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Qiangfeng Cliff Zhang, Shuigeng Zhou

J. Comput. Biol., 2013

2011

PredUs: a web server for predicting protein interfaces using structural neighbors.

Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey

Nucleic Acids Res., 2011

MarkUs: a server to navigate sequence-structure-function space.

Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey

Nucleic Acids Res., 2011