Qi Liu
Orcid: 0000-0001-8892-7078Affiliations:
- Vanderbilt University Medical Center, Department of Biostatistics, Nashville, TN, USA (since 2013)
- Chinese Academy of Sciences, Shanghai Institutes for Biological Sciences, Bioinformation Center, Shanghai, China
- Shanghai Jiao Tong University, College of Life Science and Biotechnology, Shanghai, China (PhD 2003)
According to our database1,
Qi Liu
authored at least 48 papers
between 2003 and 2024.
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Bibliography
2024
FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing.
PLoS Comput. Biol., January, 2024
Medical Image Anal., 2024
Data-driven Nucleus Subclassification on Colon H&E using Style-transferred Digital Pathology.
CoRR, 2024
2023
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures.
CoRR, 2023
Influence of cell-type ratio on spatially resolved single-cell transcriptomes using the Tangram algorithm: based on implementation on single-cell and MxIF data.
Proceedings of the Medical Imaging 2023: Digital and Computational Pathology, 2023
Topological-preserving membrane skeleton segmentation in multiplex immunofluorescence imaging.
Proceedings of the Medical Imaging 2023: Digital and Computational Pathology, 2023
Alleviating tiling effect by random walk sliding window in high-resolution histological whole slide image synthesis.
Proceedings of the Medical Imaging with Deep Learning, 2023
Feasibility of Universal Anomaly Detection Without Knowing the Abnormality in Medical Images.
Proceedings of the Medical Image Learning with Limited and Noisy Data, 2023
2022
Bioinform., 2022
Quantifying and correcting slide-to-slide variation in multiplexed immunofluorescence images.
Bioinform., 2022
Comprehensive evaluation of noise reduction methods for single-cell RNA sequencing data.
Briefings Bioinform., 2022
Cross-Scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images.
Proceedings of the Multiscale Multimodal Medical Imaging - Third International Workshop, 2022
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging.
Proceedings of the Medical Optical Imaging and Virtual Microscopy Image Analysis, 2022
2019
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers.
PLoS Comput. Biol., 2019
Nucleic Acids Res., 2019
Bioinform., 2019
2017
Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer.
BMC Bioinform., 2017
2016
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016.
BMC Bioinform., August, 2016
An improved method to construct basic probability assignment based on the confusion matrix for classification problem.
Inf. Sci., 2016
Self-adaptive win-stay-lose-shift reference selection mechanism promotes cooperation on a square lattice.
Appl. Math. Comput., 2016
2015
Impact of Preference and Equivocators on Opinion Dynamics with Evolutionary Game Framework.
CoRR, 2015
CoRR, 2015
2014
2013
CoRR, 2013
Gene and isoform expression signatures associated with tumor stage in kidney renal clear cell carcinoma.
BMC Syst. Biol., 2013
2011
The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma.
Int. J. Comput. Biol. Drug Des., 2011
2010
Erratum to "Combining belief functions based on distance of evidence" [Decision Support Systems Volume(38/3)489-493].
Decis. Support Syst., 2010
TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.
BMC Bioinform., 2010
Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
2008
Int. J. Gen. Syst., 2008
2007
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.
BMC Bioinform., 2007
2006
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families.
PLoS Comput. Biol., 2006
Comput. Math. Appl., 2006
2005
A topsis-based centroid-index ranking method of fuzzy numbers and its application in decision-making.
Cybern. Syst., 2005
Bioinform., 2005
2004
A new similarity measure of generalized fuzzy numbers and its application to pattern recognition.
Pattern Recognit. Lett., 2004
Comput. Biol. Chem., 2004
2003
Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure.
Comput. Biol. Chem., 2003
A HMM-based method to predict the transmembrane regions of \beta-barrel membrane proteins.
Comput. Biol. Chem., 2003