Purvesh Khatri

According to our database, Purvesh Khatri authored at least 31 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Development of Machine Learning Classifiers for Blood-based Diagnosis and Prognosis of Suspected Acute Infections and Sepsis.

Ljubomir J. Buturovic, Michael B. Mayhew, Roland Lüthy, Kirindi Choi, Uros Midic, Nandita Damaraju, Yehudit Hasin-Brumshtein, Amitesh Pratap, Rhys M. Adams, João F. Henriques, Ambika Srinath, Paul Fleming, Claudia Pereira, Oliver Liesenfeld, Purvesh Khatri, Timothy Sweeney

CoRR, 2024

Use of a Structured Knowledge Base Enhances Metadata Curation by Large Language Models.

Sowmya S. Sundaram, Benjamin Solomon, Avani Khatri, Anisha Laumas, Purvesh Khatri, Mark A. Musen

CoRR, 2024

2022

Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology.

Laurynas Kalesinskas, Sanjana Gupta, Purvesh Khatri

PLoS Comput. Biol., 2022

2021

SIMON: Open-Source Knowledge Discovery Platform.

Adriana Tomic, Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng, Lindsay C. Dahora, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill, Niharika A. Duggal, Ross D. Pollock, Norman R. Lazarus, Stephen D. R. Harridge, Janet M. Lord, Purvesh Khatri, Andrew J. Pollard, Mark M. Davis

Patterns, 2021

Computational drug repositioning of atorvastatin for ulcerative colitis.

Lawrence Bai, Madeleine K. D. Scott, Ethan Steinberg, Laurynas Kalesinskas, Aida Habtezion, Nigam H. Shah, Purvesh Khatri

J. Am. Medical Informatics Assoc., 2021

A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarker.

Madeleine Scott, Maneesha Limaye, Steven Schaffert, Robert West, Michael G. Ozawa, Pauline Chu, Viswam S. Nair, Albert C. Koong, Purvesh Khatri

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

Formulating a gene signature for diagnosis of autoimmune and infectious diseases.

Riya Gupta, Aditya M. Rao, Lara Murphy Jones, Purvesh Khatri

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2017

Chemical Space Mimicry for Drug Discovery.

William Yuan, Dadi Jiang, Dhanya K. Nambiar, Lydia P. Liew, Michael P. Hay, Joshua Bloomstein, Peter Lu, Brandon Turner, Quynh-Thu Le, Robert Tibshirani, Purvesh Khatri, Mark G. Moloney, Albert C. Koong

J. Chem. Inf. Model., 2017

Meta-Analysis of Continuous Phenotypes Identifies a Gene Signature that Correlates with COPD Disease Status.

Madeleine Scott, Francesco Vallania, Purvesh Khatri

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility.

Winston A. Haynes, Francesco Vallania, Charles Liu, Erika Bongen, Aurelie Tomczak, Marta Andres-Terrè, Shane Lofgren, Andrew Tam, Cole A. Deisseroth, Matthew D. Li, Timothy E. Sweeney, Purvesh Khatri

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Complementing single-cell RNA-seq using bulk transcriptional profiles.

Winston A. Haynes, Francesco Vallania, Purvesh Khatri

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Gene annotation bias impedes biomedical research.

Winston A. Haynes, Aurelie Tomczak, Purvesh Khatri

Proceedings of the AMIA 2017, 2017

2015

The center for expanded data annotation and retrieval.

Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser

J. Am. Medical Informatics Assoc., 2015

2014

Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls.

Alexander A. Morgan, Matthew D. Li, Achal S. Achrol, Purvesh Khatri, Samuel H. Cheshier

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2012

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges.

Purvesh Khatri, Marina Sirota, Atul J. Butte

PLoS Comput. Biol., 2012

2010

Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis.

Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants.

Alexander A. Morgan, Purvesh Khatri, Richard Hayden Jones, Minnie M. Sarwal, Atul J. Butte

BMC Bioinform., 2010

2009

A novel signaling pathway impact analysis.

Adi L. Tarca, Sorin Draghici, Purvesh Khatri, Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong Jai Kim, Juan Pedro Kusanovic, Roberto Romero

Bioinform., 2009

2008

Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls.

Calin Voichita, Purvesh Khatri, Sorin Draghici

Proceedings of the International Joint Conference on Neural Networks, 2008

2007

Onto-Tools: new additions and improvements in 2006.

Purvesh Khatri, Calin Voichita, Khalid Kattan, Nadeem Ansari, Avani Khatri, Constantin Georgescu, Adi L. Tarca, Sorin Draghici

Nucleic Acids Res., 2007

Semantic Analysis of Genome Annotations using Weighting Schemes.

Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici

Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks.

Purvesh Khatri, Sorin Draghici, Adi L. Tarca, Sonia S. Hassan, Roberto Romero

Proceedings of the Progress in Pattern Recognition, 2007

2006

New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.

Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici

Nucleic Acids Res., 2006

Babel's tower revisited: a universal resource for cross-referencing across annotation databases.

Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri

Bioinform., 2006

2005

Recent additions and improvements to the Onto-Tools.

Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici

Nucleic Acids Res., 2005

A semantic analysis of the annotations of the human genome.

Purvesh Khatri, Bogdan Done, Archana Rao, Arina Done, Sorin Draghici

Bioinform., 2005

Ontological analysis of gene expression data: current tools, limitations, and open problems.

Purvesh Khatri, Sorin Draghici

Bioinform., 2005

Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats.

Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman

Proceedings of the Biocomputing 2005, 2005

A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites.

Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici

Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2004

Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments.

Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici

Nucleic Acids Res., 2004

2003

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.

Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky

Nucleic Acids Res., 2003