Prakash M. Nadkarni

According to our database, Prakash M. Nadkarni authored at least 67 papers between 1991 and 2014.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2014

Brief communication: The Greater Plains Collaborative: a PCORnet Clinical Research Data Network.

Lemuel R. Waitman, Lauren S. Aaronson, Prakash M. Nadkarni, Daniel W. Connolly, James R. Campbell

J. Am. Medical Informatics Assoc., 2014

2013

Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature.

Lucila Ohno-Machado, Prakash M. Nadkarni, Kevin B. Johnson

J. Am. Medical Informatics Assoc., 2013

2012

Requirements for guidelines systems: implementation challenges and lessons from existing software-engineering efforts.

Hemant Shah, Raymond D. Allard, Robert Enberg, Ganesh Krishnan, Patricia Williams, Prakash M. Nadkarni

BMC Medical Informatics Decis. Mak., 2012

An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature.

Prakash M. Nadkarni, Chirag Parikh

J. Clin. Bioinform., 2012

2011

Web-browser encryption of personal health information.

Richard Morse, Prakash M. Nadkarni, David A. Schoenfeld, Dianne M. Finkelstein

BMC Medical Informatics Decis. Mak., 2011

Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach.

Prakash M. Nadkarni, Rowena Kemp, Chirag Parikh

J. Clin. Bioinform., 2011

Data standards for clinical research data collection forms: current status and challenges.

Rachel L. Richesson, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2011

Natural language processing: an introduction.

Prakash M. Nadkarni, Lucila Ohno-Machado, Wendy Webber Chapman

J. Am. Medical Informatics Assoc., 2011

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions.

Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner

J. Am. Medical Informatics Assoc., 2011

Interoperability and Integration Considerations for a Process-Oriented Clinical Decision Support System.

Hemant Shah, Ganesh Krishnan, Patricia Williams, Arthur Vogler, Raymond D. Allard, Prakash M. Nadkarni

Proceedings of the World Congress on Services, 2011

2010

Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study.

Prakash M. Nadkarni, Jonathan D. Darer

BMC Medical Informatics Decis. Mak., 2010

Implementing description-logic rules for SNOMED-CT attributes through a table-driven approach.

Prakash M. Nadkarni, Luis N. Marenco

J. Am. Medical Informatics Assoc., 2010

Migrating existing clinical content from ICD-9 to SNOMED.

Prakash M. Nadkarni, Jonathan A. Darer

J. Am. Medical Informatics Assoc., 2010

Drug safety surveillance using de-identified EMR and claims data: issues and challenges.

Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2010

2009

Model Formulation: Automated Database Mediation Using Ontological Metadata Mappings.

Luis N. Marenco, Rixin Wang, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2009

2007

Service-oriented Architecture in Medical Software: Promises and Perils.

Prakash M. Nadkarni, Randolph A. Miller

J. Am. Medical Informatics Assoc., 2007

Guidelines for the effective use of entity-attribute-value modeling for biomedical databases.

Valentin Dinu, Prakash M. Nadkarni

Int. J. Medical Informatics, 2007

SenseLab: new developments in disseminating neuroscience information.

Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd

Briefings Bioinform., 2007

2006

Pivoting approaches for bulk extraction of Entity-Attribute-Value data.

Valentin Dinu, Prakash M. Nadkarni, Cynthia Brandt

Comput. Methods Programs Biomed., 2006

2005

Metadata-driven Delphi rating on the Internet.

Aniruddha M. Deshpande, Richard N. Shiffman, Prakash M. Nadkarni

Comput. Methods Programs Biomed., 2005

VitaPad: visualization tools for the analysis of pathway data.

Matthew Holford, Naixin Li, Prakash M. Nadkarni, Hongyu Zhao

Bioinform., 2005

Metadata Driven Generation of Reports for Clinical Studies.

Kexin Sun, Prakash M. Nadkarni, Cynthia Brandt

Proceedings of the AMIA 2005, 2005

Automating Identification of Adverse Events Related to Abnormal Lab Results Using Standard Vocabularies.

Cynthia Brandt, Charles Lu, Prakash M. Nadkarni

Proceedings of the AMIA 2005, 2005

Informatics Tools to Improve Clinical Research.

Stephanie Argraves, Cynthia Brandt, Roy Money, Prakash M. Nadkarni

Proceedings of the AMIA 2005, 2005

2004

Model Formulation: QIS: A Framework for Biomedical Database Federation.

Luis N. Marenco, Tzuu-Yi Wang, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2004

Application of Information Technology: Managing Complex Change in Clinical Study Metadata.

Cynthia Brandt, Rohit Gadagkar, Cesar Rodriguez, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2004

Evolving standards for clinical content in biomedicine: overview and lessons.

Prakash M. Nadkarni

Int. J. Serv. Stand., 2004

2003

Text mining neuroscience journal articles to populate neuroscience databases.

Chiquito J. Crasto, Luis N. Marenco, Michele Migliore, Buqing Mao, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd

Neuroinformatics, 2003

Application of Information Technology: Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances.

Luis N. Marenco, Nicholas P. Tosches, Chiquito J. Crasto, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2003

Model Formulation: Integrating Query of Relational and Textual Data in Clinical Databases: A Case Study.

John M. Fisk, Pradeep Mutalik, Forrest W. Levin, Joseph Erdos, Caroline Taylor, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2003

Temporal query of attribute-value patient data: utilizing the constraints of clinical studies.

Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni

Int. J. Medical Informatics, 2003

Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques.

Chiquito J. Crasto, Thomas M. Morse, Michele Migliore, Prakash M. Nadkarni, Michael L. Hines, Douglas E. Brash, Perry L. Miller, Gordon M. Shepherd

Proceedings of the AMIA 2003, 2003

TrialDB: A Web-based Clinical Study Data Management System AMIA 2003 Open Source Expo.

Cynthia Brandt, Aniruddha M. Deshpande, Charles Lu, Gowri Ananth, Kexin Sun, Rohit Gadagkar, Richard Morse, Cesar Rodriguez, Perry L. Miller, Prakash M. Nadkarni

Proceedings of the AMIA 2003, 2003

2002

Application of Information Technology: Metadata-driven Ad Hoc Query of Patient Data: Meeting the Needs of Clinical Studies.

Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2002

Metadata-driven creation of data marts from an EAV-modeled clinical research database.

Cynthia Brandt, Richard Morse, Keri Matthews, Kexin Sun, Aniruddha M. Deshpande, Rohit Gadagkar, Dorothy B. Cohen, Perry L. Miller, Prakash M. Nadkarni

Int. J. Medical Informatics, 2002

2001

Research Paper: UMLS Concept Indexing for Production Databases: A Feasibility Study.

Prakash M. Nadkarni, Roland Chen, Cynthia Brandt

J. Am. Medical Informatics Assoc., 2001

Research Paper: Use of General-purpose Negation Detection to Augment Concept Indexing of Medical Documents: A Quantitative Study Using the UMLS.

Pradeep Mutalik, Aniruddha M. Deshpande, Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 2001

Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach.

Perry L. Miller, Prakash M. Nadkarni, Michael S. Singer, Luis N. Marenco, Michael L. Hines, Gordon M. Shepherd

J. Am. Medical Informatics Assoc., 2001

Web-based UMLS concept retrieval by automatic text scanning: a comparison of two methods.

Cynthia Brandt, Prakash M. Nadkarni

Comput. Methods Programs Biomed., 2001

Easing the transition between attribute-value databases and conventional databases for scientific data.

Prakash M. Nadkarni, Luis N. Marenco

Proceedings of the AMIA 2001, 2001

Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database.

Sanjay K. Fernando, Cynthia Brandt, Prakash M. Nadkarni

Proceedings of the AMIA 2001, 2001

Metadata-driven Ad Hoc Query of Clinical Studies Data.

Aniruddha M. Deshpande, Prakash M. Nadkarni

Proceedings of the AMIA 2001, 2001

A Pilot Approach to Automated and Efficient Transfer of Neuroscience Data from Journal Articles to Searchable Databases.

Chiquito J. Crasto, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd

Proceedings of the AMIA 2001, 2001

2000

Olfactory Receptor Database: a sensory chemoreceptor resource.

Emmanouil Skoufos, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd

Nucleic Acids Res., 2000

Research Paper: Exploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data Repository.

H. David Stein, Prakash M. Nadkarni, Joseph Erdos, Perry L. Miller

J. Am. Medical Informatics Assoc., 2000

Application of Information Technology: WebEAV: Automatic Metadata-driven Generation of Web Interfaces to Entity-Attribute-Value Databases.

Prakash M. Nadkarni, Cynthia Brandt, Luis N. Marenco

J. Am. Medical Informatics Assoc., 2000

Research Paper: Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation.

Roland Chen, Prakash M. Nadkarni, Luis N. Marenco, Forrest W. Levin, Joseph Erdos, Perry L. Miller

J. Am. Medical Informatics Assoc., 2000

Integration of a hematopoietic progenitor cell program using the ACT/DB database system.

Peter L. Perrotta, Prakash M. Nadkarni

Comput. Methods Programs Biomed., 2000

The SenseLab Database: System Design Towards Interoperability.

Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd

Proceedings of the AMIA 2000, 2000

1999

Olfactory Receptor Database: a database of the largest eukaryotic gene family.

Emmanouil Skoufos, Matthew D. Healy, Michael S. Singer, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd

Nucleic Acids Res., 1999

Application of Information Technology: Organization of Heterogeneous Scientific Data Using the EAV/CR Representation.

Prakash M. Nadkarni, Luis N. Marenco, Roland Chen, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller

J. Am. Medical Informatics Assoc., 1999

Neuronal database integration: the Senselab EAV data model.

Luis N. Marenco, Prakash M. Nadkarni, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller

Proceedings of the AMIA 1999, 1999

1998

Application of Technology: Managing Attribute-Value Clinical Trials Data Using the ACT/DB Client-Server Database System.

Prakash M. Nadkarni, Cynthia Brandt, Sandra J. Frawley, Frederick G. Sayward, Robin Einbinder, Daniel Zelterman, Lee Schacter, Perry L. Miller

J. Am. Medical Informatics Assoc., 1998

Application of Information Technology: Data Extraction and Ad Hoc Query of an Entity - Attribute - Value Database.

Prakash M. Nadkarni

J. Am. Medical Informatics Assoc., 1998

Mapmerge: merge genomic maps.

Prakash M. Nadkarni

Bioinform., 1998

A metadata approach to query interoperation between molecular biology databases.

Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin

Bioinform., 1998

Automatic query mapping among genomic databases: a pilot exploration.

Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin

Proceedings of the AMIA 1998, 1998

ACT/DB: A Clinical Trials Database Being Refined on a Pilot Basis at Two Medical Centers.

Cynthia Brandt, Prakash M. Nadkarni, Lee Schacter, Daniel Zelterman, Yuli Li, John M. Fisk, Edward K. Shultz, Perry L. Miller

Proceedings of the AMIA 1998, 1998

1997

Mapdiff: determining differences between two genomic maps.

Prakash M. Nadkarni

Comput. Appl. Biosci., 1997

1996

DNA Workbench: A Database Package to Manage Regional Physical Mapping.

Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd

J. Comput. Biol., 1996

Application of Technology: ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience.

Bret E. Peterson, Matthew D. Healy, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd

J. Am. Medical Informatics Assoc., 1996

1995

Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12.

Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati

J. Am. Medical Informatics Assoc., 1995

1994

A modification of the ALIGN program to assist visual interpretation of mutated sequences.

Prakash M. Nadkarni, Stephen T. Reeders, Jing Zhou

Comput. Appl. Biosci., 1994

1992

Parallel Computation for Medicine and Biology: Applications of Linda At Yale University.

Dean F. Sittig, Mark A. Shifman, Prakash M. Nadkarni, Perry L. Miller

Int. J. High Perform. Comput. Appl., 1992

Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison.

Perry L. Miller, Prakash M. Nadkarni, William R. Pearson

Comput. Appl. Biosci., 1992

Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis.

Perry L. Miller, Prakash M. Nadkarni, P. A. Bercovitz

Comput. Appl. Biosci., 1992

1991

Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm.

Perry L. Miller, Prakash M. Nadkarni, N. M. Carriero

Comput. Appl. Biosci., 1991