Po-Ting Lai

According to our database, Po-Ting Lai authored at least 40 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop.

Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu

Database J. Biol. Databases Curation, January, 2024

The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII.

Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Melo Almeida, Richard A. A. Jonker, Sofia I R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu

Database J. Biol. Databases Curation, January, 2024

Demystifying Large Language Models for Medicine: A Primer.

Qiao Jin, Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang, Zifeng Wang, Guangzhi Xiong, Po-Ting Lai, Qingqing Zhu, Benjamin Hou, Maame Sarfo-Gyamfi, Gongbo Zhang, Aidan Gilson, Balu Bhasuran, Zhe He, Aidong Zhang, Jimeng Sun, Chunhua Weng, Ronald M. Summers, Qingyu Chen, Yifan Peng, Zhiyong Lu

CoRR, 2024

GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases.

Zhizheng Wang, Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po-Ting Lai, Qingqing Zhu, Chi-Ping Day, Christina Ross, Zhiyong Lu

CoRR, 2024

EnzChemRED, a rich enzyme chemistry relation extraction dataset.

Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge

CoRR, 2024

PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge.

Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu

CoRR, 2024

2023

BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets.

Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu

J. Biomed. Informatics, October, 2023

GNorm2: an improved gene name recognition and normalization system.

Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu

Bioinform., October, 2023

AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning.

Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu

Bioinform., May, 2023

Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health.

Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu

CoRR, 2023

2022

PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology.

Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu

J. Biomed. Informatics, 2022

A sequence labeling framework for extracting drug-protein relations from biomedical literature.

Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu

Database J. Biol. Databases Curation, 2022

Assigning species information to corresponding genes by a sequence labeling framework.

Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu

Database J. Biol. Databases Curation, 2022

BioRED: a rich biomedical relation extraction dataset.

Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu

Briefings Bioinform., 2022

BioRED: A Comprehensive Biomedical Relation Extraction Dataset.

Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu

Proceedings of the AMIA 2022, 2022

2021

PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology.

Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu

Bioinform., 2021

BERT-GT: cross-sentence n-ary relation extraction with BERT and Graph Transformer.

Po-Ting Lai, Zhiyong Lu

Bioinform., 2021

2020

Biomedical named entity recognition and linking datasets: survey and our recent development.

Ming-Siang Huang, Po-Ting Lai, Pei-Yen Lin, Yu-Ting You, Richard Tzong-Han Tsai, Wen-Lian Hsu

Briefings Bioinform., 2020

Development and Validation of a Novel Reliable Method for Wet Testing on Biochemical Chip.

Po-Ting Lai, Yu-Hao Chiu, Chieh-Wen Lu, Kuang-Hsiang Liu, Tung-Liang Chiu, Wendy Chen

Proceedings of the IEEE International Test Conference in Asia, 2020

2019

Revised JNLPBA Corpus: A Revised Version of Biomedical NER Corpus for Relation Extraction Task.

Ming-Siang Huang, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu

CoRR, 2019

2018

Statistical principle-based approach for gene and protein related object recognition.

Po-Ting Lai, Ming-Siang Huang, Ting-Hao Yang, Wen-Lian Hsu, Richard Tzong-Han Tsai

J. Cheminformatics, 2018

2017

Enhancing Drug-Drug Interaction Classification with Corpus-level Feature and Classifier Ensemble.

Jing Cyun Tu, Po-Ting Lai, Richard Tzong-Han Tsai

Proceedings of the International Workshop on Digital Disease Detection using Social Media, 2017

2016

NERChem: adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition.

Richard Tzong-Han Tsai, Yu-Cheng Hsiao, Po-Ting Lai

Database J. Biol. Databases Curation, 2016

BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text.

Po-Ting Lai, Yu-Yan Lo, Ming-Siang Huang, Yu-Cheng Hsiao, Richard Tzong-Han Tsai

Database J. Biol. Databases Curation, 2016

MET network in PubMed: a text-mined network visualization and curation system.

Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Syed Abdul Shabbir, Wen-Lian Hsu

Database J. Biol. Databases Curation, 2016

2015

Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization.

Hong-Jie Dai, Po-Ting Lai, Yung-Chun Chang, Richard Tzong-Han Tsai

J. Cheminformatics, 2015

2014

A resource-saving collective approach to biomedical semantic role labeling.

Richard Tzong-Han Tsai, Po-Ting Lai

BMC Bioinform., 2014

A Hybrid System for Temporal Relation Extraction from Discharge Summaries.

Yueh-Lin Yang, Po-Ting Lai, Richard Tzong-Han Tsai

Proceedings of the Technologies and Applications of Artificial Intelligence, 2014

NCU IISR System for NTCIR-11 MedNLP-2 Task.

Sheng-Wei Chen, Po-Ting Lai, Yi-Lin Tsai, Jay Kuan-Chieh Chung, Sherry Shih-Huan Hsiao, Richard Tzong-Han Tsai

Proceedings of the 11th NTCIR Conference on Evaluation of Information Access Technologies, 2014

2012

Coreference resolution of medical concepts in discharge summaries by exploiting contextual information.

Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu

J. Am. Medical Informatics Assoc., 2012

2011

A Dynamic Programming Re-ranking Approach to Enhance PPI Interactor Extraction.

Po-Ting Lai, Richard Tzong-Han Tsai

Inf. Media Technol., 2011

Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection.

Richard Tzong-Han Tsai, Po-Ting Lai

BMC Bioinform., 2011

Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles.

Richard Tzong-Han Tsai, Po-Ting Lai

BMC Bioinform., 2011

MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature.

Yu-Ching Fang, Po-Ting Lai, Hong-Jie Dai, Wen-Lian Hsu

BMC Bioinform., 2011

2010

Multistage Gene Normalization and SVM-Based Ranking for Protein Interactor Extraction in Full-Text Articles.

Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Using Contextual Information to Clarify Cross-Species Gene Normalization Ambiguity.

Richard Tzong-Han Tsai, Po-Ting Lai

Int. J. Softw. Eng. Knowl. Eng., 2010

Global Ranking via Data Fusion.

Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu

Proceedings of the COLING 2010, 2010

2009

HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features.

Richard Tzong-Han Tsai, Po-Ting Lai, Hong-Jie Dai, Chi-Hsin Huang, Yue-Yang Bow, Yen-Ching Chang, Wen-Harn Pan, Wen-Lian Hsu

BMC Bioinform., 2009

PubMed-EX: a web browser extension to enhance PubMed search with text mining features.

Richard Tzong-Han Tsai, Hong-Jie Dai, Po-Ting Lai, Chi-Hsin Huang

Bioinform., 2009

Using Contextual Information to Clarify Gene Normalization Ambiguity.

Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu

Proceedings of the IEEE International Conference on Information Reuse and Integration, 2009