Pirooz Vakili

According to our database, Pirooz Vakili authored at least 38 papers between 1991 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Improved prediction of MHC-peptide binding using protein language models.

Nasser Hashemi, Boran Hao, Mikhail Ignatov, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda, Dima Kozakov

Frontiers Bioinform., May, 2023

2016

Focused grid-based resampling for protein docking and mapping.

Artem B. Mamonov, Mohammad Moghadasi, Hanieh Mirzaei, Shahrooz Zarbafian, Laurie E. Grove, Tanggis Bohnuud, Pirooz Vakili, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov

J. Comput. Chem., 2016

2015

The Impact of Side-Chain Packing on Protein Docking Refinement.

Mohammad Moghadasi, Hanieh Mirzaei, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis, Dima Kozakov

J. Chem. Inf. Model., 2015

2014

Optimization on the space of rigid and flexible motions: An alternative manifold optimization approach.

Pirooz Vakili, Hanieh Mirzaei, Shahrooz Zarbafian, Ioannis Ch. Paschalidis, Dima Kozakov, Sandor Vajda

Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking.

Feng Nan, Mohammad Moghadasi, Pirooz Vakili, Sandor Vajda, Dima Kozakov, Ioannis Ch. Paschalidis

Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

2013

A new distributed algorithm for side-chain positioning in the process of protein docking.

Mohammad Moghadasi, Dima Kozakov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis

Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Flexible refinement of protein-ligand docking on manifolds.

Hanieh Mirzaei, Elizabeth A. Villar, Scott E. Mottarella, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Dima Kozakov, Pirooz Vakili

Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

2012

A message passing approach to Side Chain Positioning with applications in protein docking refinement.

Mohammad Moghadasi, Dima Kozakov, Artem B. Mamonov, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis

Proceedings of the 51th IEEE Conference on Decision and Control, 2012

A new approach to rigid body minimization with application to molecular docking.

Hanieh Mirzaei, Dima Kozakov, Dmitri Beglov, Ioannis Ch. Paschalidis, Sandor Vajda, Pirooz Vakili

Proceedings of the 51th IEEE Conference on Decision and Control, 2012

2010

Importance sampling for parametric estimation.

Xiaojin Tang, Pirooz Vakili

Proceedings of the 2010 Winter Simulation Conference, 2010

Control variates for sensitivity estimation.

Tarik Borogovac, Na Sun, Pirooz Vakili

Proceedings of the 2010 Winter Simulation Conference, 2010

2008

Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes.

Yang Shen, Ioannis Ch. Paschalidis, Pirooz Vakili, Sandor Vajda

PLoS Comput. Biol., 2008

A Control Variate Approach for Improving Efficiency of Ensemble Monte Carlo

Tarik Borogovac, Francis J. Alexander, Pirooz Vakili

CoRR, 2008

Monotonicity and stratification.

Gang Zhao, Pirooz Vakili

Proceedings of the 2008 Winter Simulation Conference, Global Gateway to Discovery, 2008

Control variate technique: A constructive approach.

Tarik Borogovac, Pirooz Vakili

Proceedings of the 2008 Winter Simulation Conference, Global Gateway to Discovery, 2008

2007

SDU: A Semidefinite Programming-Based Underestimation Method for Stochastic Global Optimization in Protein Docking.

Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda

IEEE Trans. Autom. Control., 2007

Efficient estimation of option price and price sensitivities via structured database Monte Carlo (SDMC).

Gang Zhao, Tarik Borogovac, Pirooz Vakili

Proceedings of the Winter Simulation Conference, 2007

Optimizing noisy funnel-like functions on the euclidean group with applications to protein docking.

Yang Shen, Pirooz Vakili, Sandor Vajda, Ioannis Ch. Paschalidis

Proceedings of the 46th IEEE Conference on Decision and Control, 2007

2006

A new efficient simulation strategy for pricing path-dependent options.

Gang Zhao, Yakun Zhou, Pirooz Vakili

Proceedings of the Winter Simulation Conference WSC 2006, 2006

Protein-protein docking with reduced potentials by exploiting multi-dimensional energy funnels.

Ioannis Ch. Paschalidis, Yang Shen, Pirooz Vakili, Sandor Vajda

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005

On the Value of Flexibility in R&D Projects.

Leonardo P. Santiago, Pirooz Vakili

Manag. Sci., 2005

A Semi-Definite programming-based Underestimation method for global optimization in molecular docking.

Ioannis Ch. Paschalidis, Yang Shen, Sandor Vajda, Pirooz Vakili

Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005

2004

Capacity and Production Managment in a Single Product Manufacturing System.

Jian-Qiang Hu, Pirooz Vakili, Lei Huang

Ann. Oper. Res., 2004

Value of flexibility in a finite horizon decision process.

Leonardo P. Santiago, Pirooz Vakili

Proceedings of the 43rd IEEE Conference on Decision and Control, 2004

Development of a discrete event dynamic systems curriculum using a Web-based "real-time" simulated factory.

Christos G. Cassandras, Meimei Deng, Jian-Qiang Hu, Christos G. Panayiotou, Pirooz Vakili, Chenming Zhao

Proceedings of the 2004 American Control Conference, 2004

2001

Optimal allocation of heterogeneous resources: a control-theoretic approach.

Yanfeng Wang, James R. Perkins, Pirooz Vakili, Anil Khurana

Proceedings of the 40th IEEE Conference on Decision and Control, 2001

1999

Optimality of index policies for a sequential sampling problem.

David A. Castañón, Simon Streltsov, Pirooz Vakili

IEEE Trans. Autom. Control., 1999

A Non-myopic Utility Function for Statistical Global Optimization Algorithms.

Simon Streltsov, Pirooz Vakili

J. Glob. Optim., 1999

1996

Periodic and chaotic dynamics of a switched-server system under corridor policies.

Guo-Xiang Yu, Pirooz Vakili

IEEE Trans. Autom. Control., 1996

Variance reduction algorithms for parallel replicated simulation of uniformized Markov chains.

Simon Streltsov, Pirooz Vakili

Discret. Event Dyn. Syst., 1996

1995

Variance Reduction for Discrete Event Systems Driven by Poisson Processes.

Pirooz Vakili

Proceedings of the 27th conference on Winter simulation, 1995

1994

Optimality of hedging point policies in the production control of failure prone manufacturing systems.

Jian-Qiang Hu, Pirooz Vakili, Guo-Xiang Yu

IEEE Trans. Autom. Control., 1994

Uniformization based sensitivity estimation for a class of discrete-event systems.

Pirooz Vakili, Guo-Xiang Yu

Discret. Event Dyn. Syst., 1994

1993

Parallel replicated simulation of Markov chains: implementation and variance reduction.

Simon Streltsov, Pirooz Vakili

Proceedings of the 25th Winter Simulation Conference, 1993

1992

Massively Parallel and Distributed Simulation of a Class of Discrete Event Systems: A Different Perspective.

Pirooz Vakili

ACM Trans. Model. Comput. Simul., 1992

Ordinal optimization of DEDS.

Yu-Chi Ho, R. S. Sreenivas, Pirooz Vakili

Discret. Event Dyn. Syst., 1992

Correlation of Markov Chains Simulated in Parallel.

Paul Glasserman, Pirooz Vakili

Proceedings of the 24th Winter Simulation Conference, 1992

1991

Using a standard clock technique for efficient simulation.

Pirooz Vakili

Oper. Res. Lett., 1991