Pinaki Sarder

According to our database, Pinaki Sarder authored at least 43 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The Triple Aim of a Semester-Long Course in Science, Technology, and Society.

Myles Joshua Toledo Tan, Alfredo Bayu Satriya, Shaira Limson Kee, Michael Aaron G. Sy, Pinaki Sarder

Proceedings of the IEEE International Conference on Teaching, 2023

Spatially aware transformer networks for contextual prediction of diabetic nephropathy progression from whole slide images.

Benjamin Shickel, Nicholas J. Lucarelli, Adish Rao, Donghwan Yun, Kyung Chul Moon, Seung Seok Han, Pinaki Sarder

Proceedings of the Medical Imaging 2023: Digital and Computational Pathology, 2023

Generative modeling of histology tissue reduces human annotation effort for segmentation model development.

Brendon Lutnick, Nicholas J. Lucarelli, Pinaki Sarder

Proceedings of the Medical Imaging 2023: Digital and Computational Pathology, 2023

Automated reference kidney histomorphometry using a panoptic segmentation neural network correlates to patient demographics and creatinine.

Brandon Ginley, Nicholas J. Lucarelli, Jarcy Zee, Sanjay Jain, Seung Seok Han, Luis Rodrigues, Michelle L. Wong, Kuang-Yu Jen, Pinaki Sarder

Proceedings of the Medical Imaging 2023: Digital and Computational Pathology, 2023

Improving quantification of renal fibrosis using deep-DUET.

Samuel P. Border, Avi Rosenberg, Jarcy Zee, Richard M. Levenson, Kuang-Yu Jen, Pinaki Sarder, Farzad Fereidouni

Proceedings of the Medical Imaging 2023: Digital and Computational Pathology, 2023

Predicting Papillary Renal Cell Carcinoma Prognosis Using Integrative Analysis of Histopathological Images and Genomic Data.

Shaira Limson Kee, Michael Aaron G. Sy, Samuel P. Border, Nicholas J. Lucarelli, Akshita Gupta, Pinaki Sarder, Marvin C. Masalunga, Myles Joshua Toledo Tan

Proceedings of the Bioinformatics and Biomedical Engineering, 2023

2022

SAM: Self-augmentation mechanism for COVID-19 detection using chest X-ray images.

Usman Muhammad, Md. Ziaul Hoque, Mourad Oussalah, Anja Keskinarkaus, Tapio Seppänen, Pinaki Sarder

Knowl. Based Syst., 2022

A cloud-based tool for federated segmentation of whole slide images.

Brendon Lutnick, David Manthey, Jan U. Becker, Jonathan E. Zuckerman, Luis Rodrigues, Kuang Yu Jen, Pinaki Sarder

Proceedings of the Medical Imaging 2022: Digital and Computational Pathology, 2022

Computational integration of renal histology and urinary proteomics using neural networks.

Nicholas J. Lucarelli, Donghwan Yun, Dohyun Han, Brandon Ginley, Kyung Chul Moon, Avi Rosenberg, John Tomaszewski, Seung Seok Han, Pinaki Sarder

Proceedings of the Medical Imaging 2022: Digital and Computational Pathology, 2022

Automated tubular morphometric visualization for whole kidney biopsy.

Neil Kavthekar, Brandon Ginley, Samuel P. Border, Nicholas J. Lucarelli, Kuang-Yu Jen, Pinaki Sarder

Proceedings of the Medical Imaging 2022: Digital and Computational Pathology, 2022

Integrating image analysis with single cell RNA-seq data to study podocyte-specific changes in diabetic kidney disease.

Darshana Govind, Saber Meamardoost, Rabi Yacoub, Rudiyanto Gunawan, John E. Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2022: Digital and Computational Pathology, 2022

HistoLens: a generalizable tool for increasing accessibility and interpretability of quantitative analyses in digital pathology.

Samuel P. Border, Brandon Ginley, John E. Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2022: Digital and Computational Pathology, 2022

Predicting the Visual Attention of Pathologists Evaluating Whole Slide Images of Cancer.

Souradeep Chakraborty, Rajarsi Gupta, Ke Ma, Darshana Govind, Pinaki Sarder, Won-Tak Choi, Waqas Mahmud, Eric Yee, Felicia Allard, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras

Proceedings of the Medical Optical Imaging and Virtual Microscopy Image Analysis, 2022

2021

Histo-fetch - On-the-fly processing of gigapixel whole slide images simplifies and speeds neural network training.

Brendon Lutnick, Leema Krishna Murali, Brandon Ginley, Pinaki Sarder

CoRR, 2021

A distributed system improves inter-observer and AI concordance in annotating interstitial fibrosis and tubular atrophy.

Avinash Kammardi Shashiprakash, Brendon Lutnick, Brandon Ginley, Darshana Govind, Nicholas J. Lucarelli, Kuang-Yu Jen, Avi Z. Rosenberg, Anatoly Urisman, Vighnesh Walavalkar, Jonathan E. Zuckerman, Marco Delsante, Mei Lin Z. Bissonnette, John Tomaszewski, David Manthey, Pinaki Sarder

Proceedings of the Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021, 2021

User friendly, cloud based, whole slide image segmentation.

Brendon Lutnick, Avinash Kammardi Shashiprakash, David Manthey, Pinaki Sarder

Proceedings of the Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021, 2021

In silico multi-compartment detection based on multiplex immunohistochemical staining in renal pathology.

Kuang-Yu Jen, Leema Krishna Murali, Brendon Lutnick, Brandon Ginley, Darshana Govind, Hidetoshi Mori, Guofeng Gao, Pinaki Sarder

Proceedings of the Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021, 2021

Automated detection and quantification of Wilms' Tumor 1-positive cells in murine diabetic kidney disease.

Darshana Govind, Briana A. Santo, Brandon Ginley, Rabi Yacoub, Avi Z. Rosenberg, Kuang-Yu Jen, Vighnesh Walavalkar, Gregory E. Wilding, Amber M. Worral, Imtiaz Mohammad, Pinaki Sarder

Proceedings of the Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021, 2021

2020

Neural Network Segmentation of Interstitial Fibrosis, Tubular Atrophy, and Glomerulosclerosis in Renal Biopsies.

Brandon Ginley, Kuang-Yu Jen, Avi Rosenberg, Felicia Yen, Sanjay Jain, Agnes B. Fogo, Pinaki Sarder

CoRR, 2020

Unsupervised Community Detection with a Potts Model Hamiltonian, an Efficient Algorithmic Solution, and Applications in Digital Pathology.

Brendon Lutnick, Wen Dong, Zohar Nussinov, Pinaki Sarder

CoRR, 2020

Neutrophil Extracellular Traps (NETs): an unexplored territory in renal pathobiology, a pilot computational study.

Briana A. Santo, Brahm H. Segal, John Tomaszewski, Imtiaz Mohammad, Amber M. Worral, Sanjay Jain, Michelle B. Visser, Pinaki Sarder

Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

Generative modeling for renal microanatomy.

Leema Krishna Murali, Brendon Lutnick, Brandon Ginley, John Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

The presence and location of podocytes in glomeruli as affected by diabetes mellitus.

Kathryn E. Maraszek, Briana A. Santo, Rabi Yacoub, John Tomaszewski, Imtiaz Mohammad, Amber M. Worral, Pinaki Sarder

Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

Generative modeling for label-free glomerular modeling and classification.

Brendon Lutnick, Brandon Ginley, Kuang-Yu Jen, Wen Dong, Pinaki Sarder

Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

Deep learning-based automated hot-spot detection and tumor grading in human gastrointestinal neuroendocrine tumor.

Darshana Govind, Kuang-Yu Jen, Pinaki Sarder

Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

Fully automated classification of glomerular lesions in lupus nephritis.

Brandon Ginley, Kuang-Yu Jen, Avi Rosenberg, Giovanni Maria Rossi, Sanjay Jain, Pinaki Sarder

Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

Probabilistic modelling of diabetic nephropathy progression.

Samuel P. Border, Kuang-Yu Jen, Washington L. C. dos-Santos, John Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2020: Digital Pathology, 2020

2019

An integrated iterative annotation technique for easing neural network training in medical image analysis.

Brendon Lutnick, Brandon Ginley, Darshana Govind, Sean D. McGarry, Peter S. LaViolette, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Kuang-Yu Jen, Pinaki Sarder

Nat. Mach. Intell., 2019

Examining structural patterns and causality in diabetic nephropathy using inter-glomerular distance and Bayesian graphical models.

Aurijoy Majumdar, Kuang-Yu Jen, Sanjay Jain, John Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2019: Digital Pathology, 2019

Computational analysis of cerebrovascular structures imaged using two-photon microscopy.

Siddhartha Dhiman, Itender Singh, Pinaki Sarder

Proceedings of the Medical Imaging 2019: Digital Pathology, 2019

2018

Iterative annotation to ease neural network training: Specialized machine learning in medical image analysis.

Brendon Lutnick, Brandon Ginley, Darshana Govind, Sean D. McGarry, Peter S. LaViolette, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Kuang-Yu Jen, Pinaki Sarder

CoRR, 2018

Examining structural changes in diabetic nephropathy using inter-nuclear distances in glomeruli: a comparison of variously automated methods.

Olivier Simon, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2018: Digital Pathology, 2018

Deep variational auto-encoders for unsupervised glomerular classification.

Brendon Lutnick, Rabi Yacoub, Kuang-Yu Jen, John Tomaszewski, Sanjay Jain, Pinaki Sarder

Proceedings of the Medical Imaging 2018: Digital Pathology, 2018

Glomerular detection and segmentation from multimodal microscopy images using a Butterworth band-pass filter.

Darshana Govind, Brandon Ginley, Brendon Lutnick, John Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2018: Digital Pathology, 2018

Computational analysis of the structural progression of human glomeruli in diabetic nephropathy.

Brandon G. Ginley, John Tomaszewski, Kuang-Yu Jen, Agnes B. Fogo, Sanjay Jain, Pinaki Sarder

Proceedings of the Medical Imaging 2018: Digital Pathology, 2018

2017

Leveraging unsupervised training sets for multi-scale compartmentalization in renal pathology.

Brendon Lutnick, John Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

Automatic computational labeling of glomerular textural boundaries.

Brandon Ginley, John Tomaszewski, Pinaki Sarder

Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

Identification and characterization of neutrophil extracellular trap shapes in flow cytometry.

Brandon Ginley, Tiffany Emmons, Prabhu Sasankan, Constantin Urban, Brahm H. Segal, Pinaki Sarder

Proceedings of the Medical Imaging 2017: Digital Pathology, 2017

2016

Automated renal histopathology: digital extraction and quantification of renal pathology.

Pinaki Sarder, Brandon Ginley, John Tomaszewski

Proceedings of the Medical Imaging 2016: Digital Pathology, San Diego, California, United States, 27 February, 2016

2012

Segmenting Intracellular Distribution Images Derived by Fluorescent Dyes Using a Potts Model Hamiltonian

Dandan Hu, Pinaki Sarder, Peter Ronhovde, Sharon Bloch, Samuel Achilefu, Zohar Nussinov

CoRR, 2012

2011

Statistical design of position-encoded microsphere arrays at low target concentrations.

Xiaoxiao Xu, Pinaki Sarder, Arye Nehorai

Proceedings of the Conference Record of the Forty Fifth Asilomar Conference on Signals, 2011

2010

Gene Reachability Using Page Ranking on Gene Co-expression Networks.

Pinaki Sarder, Weixiong Zhang, J. Perren Cobb, Arye Nehorai

Proceedings of the Link Mining: Models, Algorithms, and Applications, 2010

2006

Deconvolution methods for 3-D fluorescence microscopy images.

Pinaki Sarder, Arye Nehorai

IEEE Signal Process. Mag., 2006