Pilar Cossio

According to our database, Pilar Cossio authored at least 12 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM.

Minkyu Jeon, Rishwanth Raghu, Miro Astore, Geoffrey Woollard, Ryan Feathers, Alkin Kaz, Sonya M. Hanson, Pilar Cossio, Ellen D. Zhong

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2024, 2024

2023

Simulation-based inference of single-molecule force spectroscopy.

Lars Dingeldein, Pilar Cossio, Roberto Covino

Mach. Learn. Sci. Technol., June, 2023

2022

Protocol for iterative optimization of modified peptides bound to protein targets.

Rodrigo Ochoa, Pilar Cossio, Thomas Fox

J. Comput. Aided Mol. Des., 2022

2021

PARCE: Protocol for Amino acid Refinement through Computational Evolution.

Rodrigo Ochoa, Miguel A. Soler, Alessandro Laio, Pilar Cossio

Comput. Phys. Commun., 2021

2020

In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target.

Isaias Lans, Ernesto Anoz-Carbonell, Karen Palacio-Rodríguez, José Antonio Aínsa, Milagros Medina, Pilar Cossio

PLoS Comput. Biol., 2020

Need for Cross-Validation of Single Particle Cryo-EM.

Pilar Cossio

J. Chem. Inf. Model., 2020

Flexi-pharma: a molecule-ranking strategy for virtual screening using pharmacophores from ligand-free conformational ensembles.

Isaias Lans, Karen Palacio-Rodríguez, Claudio N. Cavasotto, Pilar Cossio

J. Comput. Aided Mol. Des., 2020

An automated protocol for modelling peptide substrates to proteases.

Rodrigo Ochoa, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton

BMC Bioinform., 2020

2019

Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations.

Rodrigo Ochoa, Alessandro Laio, Pilar Cossio

J. Chem. Inf. Model., 2019

2017

BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images.

Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Volker Lindenstruth, Gerhard Hummer

Comput. Phys. Commun., 2017

2013

BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures.

Edoardo Sarti, Stefano Zamuner, Pilar Cossio, Alessandro Laio, Flavio Seno, Antonio Trovato

Comput. Phys. Commun., 2013

2010

Exploring the Universe of Protein Structures beyond the Protein Data Bank.

Pilar Cossio, Antonio Trovato, Fabio Pietrucci, Flavio Seno, Amos Maritan, Alessandro Laio

PLoS Comput. Biol., 2010