Pierrick Bourgeat

Orcid: 0000-0002-2605-4766

According to our database1, Pierrick Bourgeat authored at least 94 papers between 2004 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Evaluation of novel data-driven metrics of amyloid β deposition for longitudinal PET studies.
NeuroImage, October, 2023

Disease progression modelling of Alzheimer's disease using probabilistic principal components analysis.
NeuroImage, September, 2023

DBCE : A Saliency Method for Medical Deep Learning Through Anatomically-Consistent Free-Form Deformations.
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2023

An Informatics Platform for the Management of Data for Australian Dementia Network (ADNeT) Initiative.
Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

When to Use Augmentation - Variability Insufficient for Cortical Thickness Estimation Improvement.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

Generalization Properties of Geometric 3D Deep Learning Models for Medical Segmentation.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

2022
β-amyloid PET harmonisation across longitudinal studies: Application to AIBL, ADNI and OASIS3.
NeuroImage, 2022

Quantifiable brain atrophy synthesis for benchmarking of cortical thickness estimation methods.
Medical Image Anal., 2022

CorticalFlow: A Diffeomorphic Mesh Deformation Module for Cortical Surface Reconstruction.
CoRR, 2022

Lesser of Two Evils Improves Learning in the Context of Cortical Thickness Estimation Models - Choose Wisely.
Proceedings of the Data Augmentation, Labelling, and Imperfections, 2022

CorticalFlow<sup>++</sup>: Boosting Cortical Surface Reconstruction Accuracy, Regularity, and Interoperability.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

PET image harmonization using smoothing-CycleGAN.
Proceedings of the Medical Imaging 2022: Computer-Aided Diagnosis, San Diego, 2022

Trans-ResNet: Integrating Transformers and CNNs for Alzheimer's disease classification.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

2021
SA-LuT-Nets: Learning Sample-Adaptive Intensity Lookup Tables for Brain Tumor Segmentation.
IEEE Trans. Medical Imaging, 2021

Non-negative matrix factorisation improves Centiloid robustness in longitudinal studies.
NeuroImage, 2021

DeepCSR: A 3D Deep Learning Approach for Cortical Surface Reconstruction.
Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2021

CorticalFlow: A Diffeomorphic Mesh Transformer Network for Cortical Surface Reconstruction.
Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021

Detail Matters: High-Frequency Content for Realistic Synthetic MRI Generation.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2021

Smocam: Smooth Conditional Attention Mask For 3d-Regression Models.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Going Deeper With Brain Morphometry Using Neural Networks.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020
Sample-Adaptive GANs: Linking Global and Local Mappings for Cross-Modality MR Image Synthesis.
IEEE Trans. Medical Imaging, 2020

Predicting motor outcome in preterm infants from very early brain diffusion MRI using a deep learning convolutional neural network (CNN) model.
NeuroImage, 2020

Learning Sample-Adaptive Intensity Lookup Table for Brain Tumor Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

3D Brain MRI GAN-Based Synthesis Conditioned on Partial Volume Maps.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2020

2019
Ea-GANs: Edge-Aware Generative Adversarial Networks for Cross-Modality MR Image Synthesis.
IEEE Trans. Medical Imaging, 2019

Enforcing temporal consistency in Deep Learning segmentation of brain MR images.
CoRR, 2019

Identification of Functional Connectivity Features in Depression Subtypes Using a Data-Driven Approach.
Proceedings of the Graph Learning in Medical Imaging - First International Workshop, 2019

2018
Implementing the centiloid transformation for <sup>11</sup>C-PiB and β-amyloid <sup>18</sup>F-PET tracers using CapAIBL.
NeuroImage, 2018

Data Augmentation Using Synthetic Lesions Improves Machine Learning Detection of Microbleeds from MRI.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

A Framework to Objectively Identify Reference Regions for Normalizing Quantitative Imaging.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

3D cGAN based cross-modality MR image synthesis for brain tumor segmentation.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017
A normalisation framework for quantitative brain imaging; application to quantitative susceptibility mapping.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

PET-only 18F-AV1451 tau quantification.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

2016
Statistical machine learning to identify traumatic brain injury (TBI) from structural disconnections of white matter networks.
NeuroImage, 2016

CapAIBL: Automated Reporting of Cortical PET Quantification Without Need of MRI on Brain Surface Using a Patch-Based Method.
Proceedings of the Patch-Based Techniques in Medical Imaging, 2016

Automated segmentation and T2-mapping of the posterior cruciate ligament from MRI of the knee: Data from the osteoarthritis initiative.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Anatomical hubs from spectral clustering of structural connectomes.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015
Reproducibility of multiphase pseudo-continuous arterial spin labeling and the effect of post-processing analysis methods.
NeuroImage, 2015

Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge.
NeuroImage, 2015

Computer-aided detection of cerebral microbleeds in susceptibility-weighted imaging.
Comput. Medical Imaging Graph., 2015

Computational analysis of PET by AIBL (CapAIBL): a cloud-based processing pipeline for the quantification of PET images.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Efficient Multi-scale Patch-Based Segmentation.
Proceedings of the Patch-Based Techniques in Medical Imaging, 2015

Expectation-Maximization with Image-Weighted Markov Random Fields to Handle Severe Pathology.
Proceedings of the 2015 International Conference on Digital Image Computing: Techniques and Applications, 2015

2014
Amorphous Regions-of-Interest Projection Method for Simplified Longitudinal Comparison of Dynamic Regions in Cancer Imaging.
IEEE Trans. Biomed. Eng., 2014

Lesion segmentation from multimodal MRI using random forest following ischemic stroke.
NeuroImage, 2014

Distance informed Track-Weighted Imaging (diTWI): A framework for sensitising streamline information to neuropathology.
NeuroImage, 2014

Efficient machine learning framework for computer-aided detection of cerebral microbleeds using the Radon transform.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013
Research and applications: MilxXplore: a web-based system to explore large imaging datasets.
J. Am. Medical Informatics Assoc., 2013

Classification Forests and Markov Random Field to Segment Chronic Ischemic Infarcts from Multimodal MRI.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

Automatic detection of small spherical lesions using multiscale approach in 3D medical images.
Proceedings of the IEEE International Conference on Image Processing, 2013

2012
Detecting global and local hippocampal shape changes in Alzheimer's disease using statistical shape models.
NeuroImage, 2012

Constrained reverse diffusion for thick slice interpolation of 3D volumetric MRI images.
Comput. Medical Imaging Graph., 2012

Consistent estimation of shape parameters in statistical shape model by symmetric EM algorithm.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

A surface based approach for cortical thickness comparison between PiB+ and PiB- healthy control subjects.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

MR-Less Surface-Based Amyloid Estimation by Subject-Specific Atlas Selection and Bayesian Fusion.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

2011
An accurate 3D shape context based non-rigid registration method for mouse whole-body skeleton registration.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Atlas selection strategy in multi-atlas segmentation propagation with locally weighted voting using diversity-based MMR re-ranking.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Detecting hippocampal shape changes in Alzheimer's disease using statistical shape models.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Atlas selection strategy using least angle regression in multi-atlas segmentation propagation.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Local intensity model: An outlier detection framework with applications to white matter hyperintensity segmentation.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Automatic Brain Tumour Segmentation in 18F-FDOPA PET Using PET/MRI Fusion.
Proceedings of the 2011 International Conference on Digital Image Computing: Techniques and Applications (DICTA), 2011

Surface-Base Approach Using a Multi-scale EM-ICP Registration for Statistical Population Analysis.
Proceedings of the 2011 International Conference on Digital Image Computing: Techniques and Applications (DICTA), 2011

2010
An improved 3D shape context based non-rigid registration method and its application to small animal skeletons registration.
Comput. Medical Imaging Graph., 2010

An improved 3D shape context registration method for non-rigid surface registration.
Proceedings of the Medical Imaging 2010: Image Processing, 2010

Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer's Disease Using Hippocampal Atrophy Rate and Statistical Shape Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Joint Factor and Kinetic Analysis of Dynamic FDOPA PET Scans of Brain Cancer Patients.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Supervised method to build an atlas database for multi-atlas segmentation-propagation.
Proceedings of the Medical Imaging 2010: Computer-Aided Diagnosis, San Diego, 2010

3D shape context surface registration for cortical mapping.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

MILXView: A Medical Imaging, Analysis and Visualization Platform.
Proceedings of the E-Health - First IMIA/IFIP Joint Symposium, 2010

2009
Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps.
Medical Image Anal., 2009

Non-rigid registration of small animal skeletons from micro-CT using 3D shape context.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Nonrigid correction of interleaving artefacts in pelvic MRI.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Partial Volume Estimation of Brain Cortex from MRI Using Topology-Corrected Segmentation.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Automated Segmentation of the Menisci from MR Images.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008
Appearance modeling of <sup>11</sup>C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging.
NeuroImage, 2008

Cortical thickness measurement from magnetic resonance images using partial volume estimation.
Proceedings of the Medical Imaging 2008: Image Processing, 2008

MR-Less High Dimensional Spatial Normalization of 11C PiB PET Images on a Population of Elderly, Mild Cognitive Impaired and Alzheimer Disease Patients.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Automatic Delineation of Sulci and Improved Partial Volume Classification for Accurate 3D Voxel-Based Cortical Thickness Estimation from MR.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Generative atlases and atlas selection for C11-PIB PET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Improved cortical thickness measurement from MR images using partial volume estimation.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007
MR image segmentation of the knee bone using phase information.
Medical Image Anal., 2007

Expectation maximization classification and Laplacian based thickness measurement for cerebral cortex thickness estimation.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Shape based segmentation of MRIs of the bones in the knee using phase and intensity information.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

Spline Based Inhomogeneity Correction for <sup>11</sup>C-PIB PET Segmentation Using Expectation Maximization.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

Pib-Pet Segmentation for Automatic Suvr Normalisation without Mr Information.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Efficient Use of Cerebral Cortical Thickness to Correct Brain Mr Segmentation.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

Fuzzy classificationof brain MRI using a priori knowledge: weighted fuzzy C-means.
Proceedings of the IEEE 11th International Conference on Computer Vision, 2007

2006
MR Image Segmentation Using Phase Information and a Novel Multiscale Scheme.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2006

Texture-based segmentation of the knee bones in MRI using phase information.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

2005
The Use of Unwrapped Phase in MR Image Segmentation: A Preliminary Study.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Classifier vote and Gabor filter banks for wafer segmentation.
Proceedings of the 2005 International Conference on Image Processing, 2005

3D Statistical Shape Models to Embed Spatial Relationship Information.
Proceedings of the Computer Vision for Biomedical Image Applications, 2005

2004
Content based segmentation of patterned wafers.
J. Electronic Imaging, 2004

Features extraction on complex images.
Proceedings of the 2004 International Conference on Image Processing, 2004


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