Pierre Tufféry
Orcid: 0000-0003-1033-9895
According to our database1,
Pierre Tufféry
authored at least 51 papers
between 1988 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
Exploring a Structural Data Mining Approach to Design Linkers for Head-to-Tail Peptide Cyclization.
J. Chem. Inf. Model., October, 2023
DockSurf: A Molecular Modeling Software for the Prediction of Protein/Surface Adhesion.
J. Chem. Inf. Model., August, 2023
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution.
Nucleic Acids Res., July, 2023
A refined pH-dependent coarse-grained model for peptide structure prediction in aqueous solution.
Frontiers Bioinform., May, 2023
2021
InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps.
Nucleic Acids Res., 2021
Proteo3Dnet: a web server for the integration of structural information with interactomics data.
Nucleic Acids Res., 2021
2019
Nucleic Acids Res., 2019
Nucleic Acids Res., 2019
2018
InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.
Nucleic Acids Res., 2018
2017
Nucleic Acids Res., 2017
2016
InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information.
Nucleic Acids Res., 2016
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex.
Nucleic Acids Res., 2016
A critical assessment of hidden markov model sub-optimal sampling strategies applied to the generation of peptide 3D models.
J. Comput. Chem., 2016
In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1.
Comput. Biol. Chem., 2016
2015
Nucleic Acids Res., 2015
BCSearch: fast structural fragment mining over large collections of protein structures.
Nucleic Acids Res., 2015
HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling.
Bioinform., 2015
2014
PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.
Nucleic Acids Res., 2014
Bioinform., 2014
BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes.
Database J. Biol. Databases Curation, 2014
Exploring a Sub-optimal Hidden Markov Model Sampling Approach for De Novo Peptide Structure Modeling.
Proceedings of the BIOINFORMATICS 2014, 2014
2012
PEP-FOLD: an updated <i>de novo</i> structure prediction server for both linear and disulfide bonded cyclic peptides.
Nucleic Acids Res., 2012
2011
The FAF-Drugs2 server: a multistep engine to prepare electronic chemical compound collections.
Bioinform., 2011
2010
Nucleic Acids Res., 2010
Nucleic Acids Res., 2010
A fast method for large-scale <i>De Novo</i> peptide and miniprotein structure prediction.
J. Comput. Chem., 2010
Semantic Map for Structural Bioinformatics: Enhanced Service Discovery Based on High Level Concept Ontology.
Proceedings of the Resource Discovery - Third International Workshop, 2010
Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet.
Proceedings of the Resource Discovery - Third International Workshop, 2010
2009
Nucleic Acids Res., 2009
Nucleic Acids Res., 2009
Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity.
BMC Bioinform., 2009
2008
Comput. Stat. Data Anal., 2008
2007
PMG: online generation of high-quality molecular pictures and storyboarded animations.
Nucleic Acids Res., 2007
Proceedings of the 2007 IEEE International Conference on Services Computing, 2007
2006
SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace.
Nucleic Acids Res., 2006
Proceedings of the 18th International Conference on Scientific and Statistical Database Management, 2006
2005
J. Comput. Chem., 2005
2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
2003
Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
J. Comput. Chem., 2003
2002
Bioinform., 2002
1999
1993
A critical comparison of search algorithms applied to the optimization of protein side-chain conformations.
J. Comput. Chem., 1993
1988
Comput. Appl. Biosci., 1988