Pierre R. Bushel

According to our database, Pierre R. Bushel authored at least 13 papers between 2001 and 2017.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2017

goSTAG: gene ontology subtrees to tag and annotate genes within a set.

Brian D. Bennett, Pierre R. Bushel

Source Code Biol. Medicine, 2017

2013

Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.

ClarLynda R. Williams-DeVane, David M. Reif, Elaine Cohen Hubal, Pierre R. Bushel, Edward E. Hudgens, Jane E. Gallagher, Stephen W. Edwards

BMC Syst. Biol., 2013

2009

Clustering of Gene Expression Data and End-Point Measurements by Simulated Annealing.

Pierre R. Bushel

J. Bioinform. Comput. Biol., 2009

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle.

Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada, Saumyadipta Pyne

BMC Syst. Biol., 2009

2008

CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data.

Michael D. Waters, Stanley Stasiewicz, B. Alex Merrick, Kenneth B. Tomer, Pierre R. Bushel, Richard S. Paules, Nancy Stegman, Gerald Nehls, Kenneth J. Yost III, C. Harris Johnson, Scott F. Gustafson, Sandhya Xirasagar, Nianqing Xiao, Cheng-Cheng Huang, Paul Boyer, Denny D. Chan, Qinyan Pan, Hui Gong, John Taylor, Danielle Choi, Asif Rashid, Ayazaddin Ahmed, Reese Howle, James Selkirk, Raymond Tennant, Jennifer Fostel

Nucleic Acids Res., 2008

2007

Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.

Pierre R. Bushel, Russell D. Wolfinger, Greg Gibson

BMC Syst. Biol., 2007

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.

Jeff W. Chou, Tong Zhou, William K. Kaufmann, Richard S. Paules, Pierre R. Bushel

BMC Bioinform., 2007

2006

Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application.

Sandhya Xirasagar, Scott F. Gustafson, Cheng-Cheng Huang, Qinyan Pan, Jennifer Fostel, Paul Boyer, B. Alex Merrick, Kenneth B. Tomer, Denny D. Chan, Kenneth J. Yost III, Danielle Choi, Nianqing Xiao, Stanley Stasiewicz, Pierre R. Bushel, Michael D. Waters

Bioinform., 2006

PAGE: phase-shifted analysis of gene expression.

Elo Leung, Pierre R. Bushel

Bioinform., 2006

2005

Systematic Variation Normalization in Microarray Data to Get Gene Expression Comparison Unbiased.

Jeff W. Chou, Richard S. Paules, Pierre R. Bushel

J. Bioinform. Comput. Biol., 2005

2002

Computational selection of distinct class- and subclass-specific gene expression signatures.

Pierre R. Bushel, Hisham Hamadeh, Lee Bennett, James Green, Alan Ableson, Stephen Misener, Cynthia A. Afshari, Richard S. Paules

J. Biomed. Informatics, 2002

2001

Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models.

Russell D. Wolfinger, Greg Gibson, Elizabeth D. Wolfinger, Lee Bennett, Hisham Hamadeh, Pierre R. Bushel, Cynthia A. Afshari, Richard S. Paules

J. Comput. Biol., 2001

MAPS: a microarray project system for gene expression experiment information and data validation.

Pierre R. Bushel, Hisham Hamadeh, Lee Bennett, Stella Sieber, Karla Martin, Emile F. Nuwaysir, Kate Johnson, Kelli Reynolds, Richard S. Paules, Cynthia A. Afshari

Bioinform., 2001