Philippe Lemey
Orcid: 0000-0003-2826-5353
According to our database1,
Philippe Lemey
authored at least 25 papers
between 2005 and 2024.
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Bibliography
2024
Bioinform., February, 2024
2023
PLoS Comput. Biol., 2023
2021
J. Comput. Graph. Stat., 2021
2020
Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.
Bioinform., 2020
Proceedings of the Machine Learning and Knowledge Discovery in Databases. Applied Data Science and Demo Track, 2020
2018
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2018
2017
Nat., 2017
Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.
Bioinform., 2017
2016
Bioinform., 2016
2015
Nat., 2015
2014
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.
PLoS Comput. Biol., 2014
πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
BMC Bioinform., 2014
2013
Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution.
BMC Bioinform., 2013
Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.
Bioinform., 2013
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013
2012
A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection.
Bioinform., 2012
2011
Bioinform., 2011
2010
Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape.
BMC Bioinform., 2010
Bioinform., 2010
2009
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning.
BMC Bioinform., 2009
2008
Estimation of an <i>in vivo</i> fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment.
Bioinform., 2008
2007
Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics.
PLoS Comput. Biol., 2007
Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution <i>In Vivo</i>.
J. Comput. Biol., 2007
2005
SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference.
Bioinform., 2005