Philipp Bucher
Orcid: 0000-0003-4824-885X
According to our database1,
Philipp Bucher
authored at least 59 papers
between 1984 and 2021.
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Bibliography
2021
Computational identification and experimental characterization of preferred downstream positions in human core promoters.
PLoS Comput. Biol., 2021
2020
Nucleic Acids Res., 2020
2019
2018
MGA repository: a curated data resource for ChIP-seq and other genome annotated data.
Nucleic Acids Res., 2018
PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix.
Bioinform., 2018
2017
SNP2TFBS - a database of regulatory SNPs affecting predicted transcription factor binding site affinity.
Nucleic Acids Res., 2017
The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms.
Nucleic Acids Res., 2017
2016
Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters.
PLoS Comput. Biol., 2016
BMC Genom., 2016
Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.
BMC Bioinform., 2016
2015
The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools.
Nucleic Acids Res., 2015
2014
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res., 2014
Study of cell differentiation by phylogenetic analysis using histone modification data.
BMC Bioinform., 2014
Bioinform., 2014
Transcription factor binding and nucleosome positioning are alternative pathways for transcription start site selection in eukaryotic promoters.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
2013
EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era.
Nucleic Acids Res., 2013
UCNEbase - a database of ultraconserved non-coding elements and genomic regulatory blocks.
Nucleic Acids Res., 2013
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013
2012
J. Bioinform. Comput. Biol., 2012
Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements.
Bioinform., 2012
2011
ZFN-Site searches genomes for zinc finger nuclease target sites and off-target sites.
BMC Bioinform., 2011
2009
Nucleic Acids Res., 2009
2007
MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data.
Nucleic Acids Res., 2007
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.
BMC Bioinform., 2007
2006
EPD in its twentieth year: towards complete promoter coverage of selected model organisms.
Nucleic Acids Res., 2006
HTPSELEX - a database of high-throughput SELEX libraries for transcription factor binding sites.
Nucleic Acids Res., 2006
2005
Stealth Proteins: In Silico Identification of a Novel Protein Family Rendering Bacterial Pathogens Invisible to Host Immune Defense.
PLoS Comput. Biol., 2005
Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge.
Bioinform., 2005
2004
Nucleic Acids Res., 2004
Nucleic Acids Res., 2004
CleanEx: a database of heterogeneous gene expression data based on a consistent gene nomenclature.
Nucleic Acids Res., 2004
2003
Nucleic Acids Res., 2003
APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003
Modeling sequencing errors by combining Hidden Markov models.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003
2002
The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.
Nucleic Acids Res., 2002
Briefings Bioinform., 2002
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform., 2002
2001
Nucleic Acids Res., 2001
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001
2000
InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000
1999
Nucleic Acids Res., 1999
ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999
1998
Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA.
Silico Biol., 1998
1997
1996
Comput. Appl. Biosci., 1996
A Sequence Similarity Search Algorithm Based on a Probabilistic Interpretation of an Alignment Scoring System.
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996
1994
A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation.
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994
1984
Signal search analysis: a new method to localize and characterize functionally important DNA sequences.
Nucleic Acids Res., 1984