Philip V. Ogren

According to our database, Philip V. Ogren authored at least 24 papers between 1999 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Adaptive Question Answering: Enhancing Language Model Proficiency for Addressing Knowledge Conflicts with Source Citations.

Sagi Shaier, Ari Kobren, Philip V. Ogren

Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024

2014

ClearTK 2.0: Design Patterns for Machine Learning in UIMA.

Steven Bethard, Philip V. Ogren, Lee Becker

Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014

2011

High-Precision Biological Event Extraction: Effects of System and of Data.

K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter

Comput. Intell., 2011

2010

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute

J. Am. Medical Informatics Assoc., 2010

Improving Syntactic Coordination Resolution using Language Modeling.

Philip V. Ogren

Proceedings of the Human Language Technologies: Conference of the North American Chapter of the Association of Computational Linguistics, Proceedings, June 2, 2010, Los Angeles, California, USA, 2010

An architecture for complex clinical question answering.

Rodney D. Nielsen, James J. Masanz, Philip V. Ogren, Wayne H. Ward, James H. Martin, Guergana K. Savova, Martha Palmer

Proceedings of the ACM International Health Informatics Symposium, 2010

2009

High-precision biological event extraction with a concept recognizer.

K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Lawrence Hunter

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008

Word sense disambiguation across two domains: Biomedical literature and clinical notes.

Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute

J. Biomed. Informatics, 2008

Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification.

Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute

J. Am. Medical Informatics Assoc., 2008

OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.

Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr., Helen L. Johnson, Philip V. Ogren, K. Bretonnel Cohen

BMC Bioinform., 2008

System Evaluation on a Named Entity Corpus from Clinical Notes.

Karin Schuler, Vinod Kaggal, James J. Masanz, Philip V. Ogren, Guergana K. Savova

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition.

Philip V. Ogren, Guergana K. Savova, Christopher G. Chute

Proceedings of the International Conference on Language Resources and Evaluation, 2008

2006

Knowtator: A Protégé plug-in for annotated corpus construction.

Philip V. Ogren

Proceedings of the Human Language Technology Conference of the North American Chapter of the Association of Computational Linguistics, 2006

Building and Evaluating Annotated Corpora for Medical NLP Systems.

Philip V. Ogren, Guergana Savova, James D. Buntrock, Christopher G. Chute

Proceedings of the AMIA 2006, 2006

2005

BioCreAtIvE Task1A: entity identification with a stochastic tagger.

Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Ogren, Lawrence Hunter

BMC Bioinform., 2005

Implications of Compositionality in the Gene Ontology for Its Curation and Usage .

Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter

Proceedings of the Biocomputing 2005, 2005

Corpus Design for Biomedical Natural Language Processing.

K. Bretonnel Cohen, Lynne M. Fox, Philip V. Ogren, Lawrence Hunter

Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, 2005

Empirical data on corpus design and usage in biomedical natural language processing.

K. Bretonnel Cohen, Philip V. Ogren, Lynne M. Fox, Lawrence Hunter

Proceedings of the AMIA 2005, 2005

2004

The Compositional Structure of Gene Ontology Terms.

Philip V. Ogren, K. Bretonnel Cohen, George K. Acquaah-Mensah, Jens Eberlein, Lawrence Hunter

Proceedings of the Biocomputing 2004, 2004

2000

A formal approach to integrating synonyms with a reference terminology.

Harold R. Solbrig, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute

Proceedings of the AMIA 2000, 2000

A randomized controlled trial of concept based indexing of Web page content.

Peter L. Elkin, Alexander Ruggieri, Larry Bergstrom, Brent A. Bauer, Mark Lee, Philip V. Ogren, Christopher G. Chute

Proceedings of the AMIA 2000, 2000

1999

Barriers to the clinical implementation of compositionality.

Lawrence K. McKnight, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute

Proceedings of the AMIA 1999, 1999

A large-scale evaluation of terminology integration characteristics.

Furman S. McDonald, Christopher G. Chute, Philip V. Ogren, Dietlind Wahner-Roedler, Peter L. Elkin

Proceedings of the AMIA 1999, 1999

A randomized double-blind controlled trial of automated term dissection.

Peter L. Elkin, Kent R. Bailey, Philip V. Ogren, Brent A. Bauer, Christopher G. Chute

Proceedings of the AMIA 1999, 1999