Petri Törönen

According to our database, Petri Törönen authored at least 19 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Correction: Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences.

Ilya Plyusnin, Liisa Holm, Petri Törönen

PLoS Comput. Biol., 2022

2021

A New Approach to Multilabel Stratified Cross Validation with Application to Large and Sparse Gene Ontology Datasets.

Henri Tiittanen, Liisa Holm, Petri Törönen

CoRR, 2021

2019

Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences.

Ilya Plyusnin, Liisa Holm, Petri Törönen

PLoS Comput. Biol., 2019

2018

PANNZER2: a rapid functional annotation web server.

Petri Törönen, Alan Medlar, Liisa Holm

Nucleic Acids Res., 2018

AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination.

Alan Medlar, Petri Törönen, Liisa Holm

Nucleic Acids Res., 2018

2016

Robust multi-group gene set analysis with few replicates.

Pashupati P. Mishra, Alan Medlar, Liisa Holm, Petri Törönen

BMC Bioinform., 2016

2015

PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment.

Patrik Koskinen, Petri Törönen, Jussi Nokso-Koivisto, Liisa Holm

Bioinform., 2015

2014

Gene set analysis: limitations in popular existing methods and proposed improvements.

Pashupati P. Mishra, Petri Törönen, Yrjö Leino, Liisa Holm

Bioinform., 2014

2013

GOParGenPy: a high throughput method to generate Gene Ontology data matrices.

Ajay Kumar, Liisa Holm, Petri Törönen

BMC Bioinform., 2013

2010

Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions.

Petri Pehkonen, Garry Wong, Petri Törönen

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2009

Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries?

Martti Tolvanen, Pauli J. Ojala, Petri Törönen, Heidi Anderson, Jukka Partanen, Hannu Turpeinen

J. Biomed. Informatics, 2009

Generation of Gene Ontology benchmark datasets with various types of positive signal.

Petri Törönen, Petri Pehkonen, Liisa Holm

BMC Bioinform., 2009

Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function.

Petri Törönen, Pauli J. Ojala, Pekka Marttinen, Liisa Holm

BMC Bioinform., 2009

2006

POXO: a web-enabled tool series to discover transcription factor binding sites.

Matti Kankainen, Petri Pehkonen, Päivi Rosenström, Petri Törönen, Garry Wong, Liisa Holm

Nucleic Acids Res., 2006

Bayesian search of functionally divergent protein subgroups and their function specific residues.

Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm

Bioinform., 2006

2005

Theme discovery from gene lists for identification and viewing of multiple functional groups.

Petri Pehkonen, Garry Wong, Petri Törönen

BMC Bioinform., 2005

2004

Selection of informative clusters from hierarchical cluster tree with gene classes.

Petri Törönen

BMC Bioinform., 2004

2003

Trustworthiness and metrics in visualizing similarity of gene expression.

Samuel Kaski, Janne Nikkilä, Merja Oja, Jarkko Venna, Petri Törönen, Eero Castrén

BMC Bioinform., 2003

2002

Analysis and visualization of gene expression data using Self-Organizing Maps.

Janne Nikkilä, Petri Törönen, Samuel Kaski, Jarkko Venna, Eero Castrén, Garry Wong

Neural Networks, 2002