Petras J. Kundrotas

According to our database, Petras J. Kundrotas authored at least 13 papers between 2006 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Text mining for modeling of protein complexes enhanced by machine learning.

Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser

Bioinform., 2021

2018

Computational Feasibility of an Exhaustive Search of Side-Chain Conformations in Protein-Protein Docking.

Taras Dauzhenka, Petras J. Kundrotas, Ilya A. Vakser

J. Comput. Chem., 2018

Inhibition of protein interactions: co-crystalized protein-protein interfaces are nearly as good as holo proteins in rigid-body ligand docking.

Saveliy Belkin, Petras J. Kundrotas, Ilya A. Vakser

J. Comput. Aided Mol. Des., 2018

Natural language processing in text mining for structural modeling of protein complexes.

Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser

BMC Bioinform., 2018

2016

Template-Based Modeling of Protein-RNA Interactions.

Jinfang Zheng, Petras J. Kundrotas, Ilya A. Vakser, Shiyong Liu

PLoS Comput. Biol., 2016

Genome-Wide Structural Modeling of Protein-Protein Interactions.

Ivan V. Anishchenko, Varsha D. Badal, Taras Dauzhenka, Madhurima Das, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser

Proceedings of the Bioinformatics Research and Applications - 12th International Symposium, 2016

2015

Text Mining for Protein Docking.

Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser

PLoS Comput. Biol., 2015

Simulated unbound structures for benchmarking of protein docking in the Dockground resource.

Tatsiana Kirys, Anatoly M. Ruvinsky, Deepak Singla, Alexander V. Tuzikov, Petras J. Kundrotas, Ilya A. Vakser

BMC Bioinform., 2015

2010

Accuracy of Protein-Protein Binding Sites in High-Throughput Template-Based Modeling.

Petras J. Kundrotas, Ilya A. Vakser

PLoS Comput. Biol., 2010

GWIDD: Genome-wide protein docking database.

Petras J. Kundrotas, Zhengwei Zhu, Ilya A. Vakser

Nucleic Acids Res., 2010

2007

PROTCOM: searchable database of protein complexes enhanced with domain-domain structures.

Petras J. Kundrotas, Emil Alexov

Nucleic Acids Res., 2007

Assessing the Quality of the Homology-Modeled 3D Structures from electrostatic Standpoint: Test on bacterial nucleoside monophosphate kinase Families.

Petras J. Kundrotas, Paulina Georgieva, Alexandra Shosheva, Petya Christova, Emil Alexov

J. Bioinform. Comput. Biol., 2007

2006

Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives.

Petras J. Kundrotas, Emil Alexov

BMC Bioinform., 2006