Petr Holub

According to our database, Petr Holub authored at least 48 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Sharing sensitive data in life sciences: an overview of centralized and federated approaches.

Maria A Rujano, Jan-Willem Boiten, Christian Ohmann, Steve Canham, Sergio Contrino, Romain David, Jonathan Ewbank, Claudia Filippone, Claire Connellan, Ilse Custers, Rick van Nuland, Michaela Theresia Mayrhofer, Petr Holub, Eva García Álvarez, Emmanuel Bacry, Nigel Hughes, Mallory Ann Freeberg, Birgit Schaffhauser, Harald Wagener, Alex Sánchez-Pla, Guido Bertolini, Maria Panagiotopoulou

Briefings Bioinform., 2024

2023

xOpat: eXplainable Open Pathology Analysis Tool.

Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, R. Nenutil, Jan Byska, Vít Rusnák

Comput. Graph. Forum, June, 2023

Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness.

Romain David, Audrey S. Richard, Claire Connellan, Katharina B. Lauer, Maria Luisa Chiusano, Carole A. Goble, Martin Houde, Isabel Kemmer, Antje Keppler, Philippe Lieutaud, Christian Ohmann, Maria Panagiotopoulou, Sara Raza Khan, Arina Rybina, Stian Soiland-Reyes, Charlotte Wit, Rudolf Wittner, Rafael Andrade Buono, Sarah Arnaud Marsh, Pauline Audergon, Dylan Bonfils, José María Carazo, Remi Charrel, Frederik Coppens, Wolfgang Fecke, Claudia Filippone, Eva G. Alvarez, Sheraz Gul, Henning Hermjakob, Katja Herzog, Petr Holub, Lukasz Kozera, Allyson L. Lister, José López-Coronado, Bénédicte Madon, Kurt Majcen, William Martin, Wolfgang Müller, Elli Papadopoulou, Christine M. A. Prat, Paolo Romano, Susanna-Assunta Sansone, Gary Saunders, Niklas Blomberg, Jonathan Ewbank

Data Sci. J., January, 2023

Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities.

Christian Ohmann, Maria Panagiotopoulou, Steve Canham, Petr Holub, Kurt Majcen, Gary Saunders, Maddalena Fratelli, Jing Tang, Philip Gribbon, Reagon Karki, Mari Kleemola, Katja Moilanen, Daan Broeder, Walter Daelemans, Pieter Fivez

Int. J. Metadata Semant. Ontologies, 2023

2022

EOSC-LIFE WP4 TOOLBOX: Toolbox for sharing of sensitive data - a concept description.

Jan-Willem Boiten, Christian Ohmann, Ayodeji Adeniran, Steve Canham, Mónica Cano Abadia, Gauthier Chassang, Maria Luisa Chiusano, Romain David, Maddalena Fratelli, Philip Gribbon, Petr Holub, Rebecca Ludwig, Michaela Theresia Mayrhofer, Mihaela Matei, Arshiya Merchant, Maria Panagiotopoulou, Luca Pireddu, Alex Sánchez-Pla, Irene Schlünder, George Tsamis, Harald Wagener

CoRR, 2022

The Common Provenance Model: Capturing Distributed Provenance in Life Sciences Processes.

Francesca Frexia, Cecilia Mascia, Rudolf Wittner, Markus Plass, Heimo Müller, Jörg Geiger, Petr Holub

Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

2021

Integration of Biobanks in National eHealth Ecosystems Facilitating Long-Term Longitudinal Clinical-Omics Studies and Citizens' Engagement in Research Through eHealthBioR.

Athos Antoniades, Maria Papaioannou, Apostolos Malatras, Gregory Papagregoriou, Heimo Müller, Petr Holub, Constantinos Deltas, Christos N. Schizas

Frontiers Digit. Health, 2021

ISO 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data.

Rudolf Wittner, Petr Holub, Heimo Müller, Jörg Geiger, Carole A. Goble, Stian Soiland-Reyes, Luca Pireddu, Francesca Frexia, Cecilia Mascia, Elliot Fairweather, Jason R. Swedlow, Josh Moore, Caterina Strambio-De-Castillia, David Grunwald, Hiroki Nakae

Proceedings of the Provenance and Annotation of Data and Processes, 2021

Non-repudiable Provenance for Clinical Decision Support Systems.

Elliot Fairweather, Rudolf Wittner, Martin Chapman, Petr Holub, Vasa Curcin

Proceedings of the Provenance and Annotation of Data and Processes, 2021

2020

State of FAIRness in ESFRI Projects.

Peter Wittenburg, Franciska de Jong, Dieter Van Uytvanck, Massimo Cocco, Keith G. Jeffery, Michael Lautenschlager, Hannes Thiemann, Margareta Hellström, Ari Asmi, Petr Holub

Data Intell., 2020

2019

Pan-European Data Harmonization for Biobanks in ADOPT BBMRI-ERIC.

Sebastian Mate, Marvin O. Kampf, Wolfgang Rödle, Stefan Kraus, Rumyana Proynova, Kaisa Silander, Lars Ebert, Martin Lablans, Christina Schüttler, Christian Knell, Niina Eklund, Michael Hummel, Petr Holub, Hans-Ulrich Prokosch

Appl. Clin. Inform., 2019

Towards a reconstructive methodology for building a provenance metamodel that fits the complex bioinformatics pipelines.

Isabelle Perseil, Petr Holub

Proceedings of Workshop on Research Objects (RO2019), 2019

2018

Dynamic reconfiguration in multigroup multicast routing under uncertainty.

Pavel Troubil, Hana Rudová, Petr Holub

J. Heuristics, 2018

2017

Four simple recommendations to encourage best practices in research software.

Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch

F1000Research, 2017

BiobankUniverse: automatic matchmaking between datasets for biobank data discovery and integration.

Chao Pang, Fleur D. L. Kelpin, David van Enckevort, Niina Eklund, Kaisa Silander, Dennis Hendriksen, Mark de Haan, Jonathan Jetten, Tommy de Boer, Bart Charbon, Petr Holub, Hans L. Hillege, Morris A. Swertz

Bioinform., 2017

A Decentralized IT Architecture for Locating and Negotiating Access to Biobank Samples.

Rumyana Proynova, Diogo Alexandre, Martin Lablans, David van Enckevort, Sebastian Mate, Niina Eklund, Kaisa Silander, Michael Hummel, Petr Holub, Frank Ückert

Proceedings of the German Medical Data Sciences: Visions and Bridges, 2017

2016

Toward natural multi-user interaction in advanced collaborative display environments.

Vít Rusnák, Lukás Rucka, Petr Holub

Future Gener. Comput. Syst., 2016

High-performance forward error correction: Enabling multi-gigabit flows and beyond on commodity GPU and CPU hardware in presence of packet loss.

Milan Kabát, Vojtech David, Petr Holub, Martin Pulec

Future Gener. Comput. Syst., 2016

2014

Media Streams Planning with Uncertain Link Capacities.

Pavel Troubil, Hana Rudová, Petr Holub

Proceedings of the 2014 IEEE 13th International Symposium on Network Computing and Applications, 2014

Local Search Heuristics for Media Streams Planning with Transcoding.

Jiri Marek, Hana Rudová, Petr Holub

Proceedings of the 2014 IEEE 13th International Symposium on Network Computing and Applications, 2014

2013

GPU-accelerated DXT and JPEG compression schemes for low-latency network transmissions of HD, 2K, and 4K video.

Petr Holub, Martin Srom, Martin Pulec, Jiri Matela, Martin Jirman

Future Gener. Comput. Syst., 2013

Media Streams Planning with Transcoding.

Pavel Troubil, Hana Rudová, Petr Holub

Proceedings of the 2013 IEEE 12th International Symposium on Network Computing and Applications, 2013

Local Search Heuristics for Media Streams Planning Problem.

Jiri Marek, Petr Holub, Hana Rudová

Proceedings of the 27th IEEE International Conference on Advanced Information Networking and Applications, 2013

2012

UltraGrid: low-latency high-quality video transmissions on commodity hardware.

Petr Holub, Jiri Matela, Martin Pulec, Martin Srom

Proceedings of the 20th ACM Multimedia Conference, MM '12, Nara, Japan, October 29, 2012

Towards User-Aware Multi-touch Interaction Layer for Group Collaborative Systems.

Vít Rusnák, Lukás Rucka, Petr Holub

Proceedings of the Mathematical and Engineering Methods in Computer Science, 2012

Exploring Collaboration in Group-to-Group Videoconferencing.

Petr Slovák, Peter Novák, Pavel Troubil, Vít Rusnák, Petr Holub, Erik C. Hofer

Proceedings of the From Research to Practice in the Design of Cooperative Systems: Results and Open Challenges, 2012

2011

Data transfer planning with tree placement for collaborative environments.

Petr Holub, Hana Rudová, Milos Liska

Constraints An Int. J., 2011

Low GPU Occupancy Approach to Fast Arithmetic Coding in JPEG2000.

Jiri Matela, Martin Srom, Petr Holub

Proceedings of the Mathematical and Engineering Methods in Computer Science, 2011

Efficient JPEG2000 EBCOT Context Modeling for Massively Parallel Architectures.

Jiri Matela, Vít Rusnák, Petr Holub

Proceedings of the 2011 Data Compression Conference (DCC 2011), 2011

Exploring trust in group-to-group video-conferencing.

Petr Slovák, Peter Novák, Pavel Troubil, Petr Holub, Erik C. Hofer

Proceedings of the International Conference on Human Factors in Computing Systems, 2011

2010

Design and implementation of a production dynamically configurable testbed.

Kenny Welshons, Patrick Dorn, Andrei Hutanu, Petr Holub, John Vollbrecht, Gabrielle Allen

Proceedings of the 2010 TeraGrid Conference, 2010

GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000.

Jiri Matela, Vít Rusnák, Petr Holub

Proceedings of the Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, 2010

GColl: enhancing trust in flexible group-to-group videoconferencing.

Petr Slovák, Pavel Troubil, Petr Holub

Proceedings of the 28th International Conference on Human Factors in Computing Systems, 2010

2009

GColl: A Flexible Videoconferencing Environment for Group-to-Group Interaction.

Petr Slovák, Pavel Troubil, Petr Holub

Proceedings of the Human-Computer Interaction, 2009

jSon: Network of Active Elements with Peer-to-Peer Control Plane.

Michal Procházka, Petr Holub, Eva Hladká

Proceedings of the Eighth International Conference on Networks, 2009

CoUniverse: Framework for Building Self-Organizing Collaborative Environments Using Extreme-Bandwidth Media Applications.

Milos Liska, Petr Holub

Proceedings of the Eighth International Conference on Networks, 2009

GColl group-to-group videoconferencing system: design and first experiences.

Petr Slovák, Pavel Troubil, Petr Holub

Proceedings of the 5th International Conference on Collaborative Computing: Networking, 2009

VirtCloud: Virtualising Network for Grid Environments.

David Antos, Ludek Matyska, Petr Holub, Jirí Sitera

Proceedings of the IEEE 23rd International Conference on Advanced Information Networking and Applications, 2009

2007

Secure and Pervasive Collaborative Platform for Medical Applications.

Petr Holub, Eva Hladká, Michal Procházka, Milos Liska

Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

Uncompressed HD video for collaborative teaching - an experiment.

Andrei Hutanu, Ravi Paruchuri, Daniel Eiland, Milos Liska, Petr Holub, Steven R. Thorpe, Yufeng Xin

Proceedings of the 3rd International Conference on Collaborative Computing: Networking, 2007

Transparent security for collaborative environments.

Eva Hladká, Daniel Kouril, Michal Procházka, Ludek Matyska, Petr Holub

Proceedings of the 3rd International Conference on Collaborative Computing: Networking, 2007

2006

Distributed and collaborative visualization of large data sets using high-speed networks.

Andrei Hutanu, Gabrielle Allen, Stephen David Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Milos Liska, Jon MacLaren, Ludek Matyska, Ravi Paruchuri, Steffen Prohaska, Edward Seidel, Brygg Ullmer, Shalini Venkataraman

Future Gener. Comput. Syst., 2006

High-definition multimedia for multiparty low-latency interactive communication.

Petr Holub, Ludek Matyska, Milos Liska, Lukás Hejtmánek, Jirí Denemark, Tomás Rebok, Andrei Hutanu, Ravi Paruchuri, Jan Radil, Eva Hladká

Future Gener. Comput. Syst., 2006

Active Element Network with P2P Control Plane.

Michal Procházka, Petr Holub, Eva Hladká

Proceedings of the Self-Organizing Systems, First International Workshop, 2006

2005

Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution.

Petr Holub, Eva Hladká, Ludek Matyska

Proceedings of the Networking, 2005

2004

Distributed Encoding Environment based on Grids and IBP Infrastructure.

Petr Holub, Lukás Hejtmánek

Proceedings of the One step ahead, 2004

User-Empowered Programmable Network Support for Collaborative Environment.

Eva Hladká, Petr Holub, Jirí Denemark

Proceedings of the Universal Multiservice Networks: Third European Conference, 2004

Grid Infrastructure Monitoring as Reliable Information Service.

Petr Holub, Martin Kuba, Ludek Matyska, Miroslav Ruda

Proceedings of the Grid Computing, 2004