Peter Murray-Rust

According to our database, Peter Murray-Rust authored at least 57 papers between 1997 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

'pygetpapers': a Python library for automated retrieval of scientific literature.

Ayush Garg, Richard Smith-Unna, Peter Murray-Rust

J. Open Source Softw., 2022

2017

Extracting data from vector figures in scholarly articles.

Chris Hartgerink, Peter Murray-Rust

CoRR, 2017

2015

Standards-based curation of a decade-old digital repository dataset of molecular information.

Matthew J. Harvey, Nicholas J. Mason, Andrew McLean, Peter Murray-Rust, Henry S. Rzepa, James J. P. Stewart

J. Cheminformatics, 2015

2014

The ContentMine Scraping Stack: Literature-scale Content Mining with Community-maintained Collections of Declarative Scrapers.

Richard Smith-Unna, Peter Murray-Rust

D Lib Mag., 2014

AMI-diagram: Mining Facts from Images.

Peter Murray-Rust, Richard Smith-Unna, Ross Mounce

D Lib Mag., 2014

The Social, Political and Legal Aspects of Text and Data Mining (TDM).

Michelle Brook, Peter Murray-Rust, Charles Oppenheim

D Lib Mag., 2014

2013

An e-Science data infrastructure for simulations within Grid computing environment: methods, approaches and practice.

Xiaoyu Yang, Martin T. Dove, Richard Paul Bruin, Andrew D. Walkingshaw, Richard Sinclair, Dan J. Wilson, Peter Murray-Rust

Concurr. Comput. Pract. Exp., 2013

The Declaratron, semantic specification for scientific computation using MathML.

Dave Murray-Rust, Peter Murray-Rust

Proceedings of the Joint Proceedings of the MathUI, 2013

How do we make Scholarship Semantic?

Peter Murray-Rust

Proceedings of the 3rd Workshop on Semantic Publishing, 2013

2012

Changing computational research. The challenges ahead.

Cameron Neylon, Jan Aerts, C. Titus Brown, Simon J. Coles, Les Hatton, Daniel Lemire, K. Jarrod Millman, Peter Murray-Rust, Fernando Pérez, Neil F. W. Saunders, Nigam Shah, Arfon M. Smith, Gaël Varoquaux, Egon L. Willighagen

Source Code Biol. Medicine, 2012

Chempound - a Web 2.0-inspired repository for physical science data.

Sam E. Adams, Peter Murray-Rust

J. Digit. Inf., 2012

The semantics of Chemical Markup Language (CML) for computational chemistry: CompChem.

Weerapong Phadungsukanan, Markus Kraft, Joe Townsend, Peter Murray-Rust

J. Cheminformatics, 2012

Semantic physical science.

Peter Murray-Rust, Henry S. Rzepa

J. Cheminformatics, 2012

2011

Chemical Name to Structure: OPSIN, an Open Source Solution.

Daniel M. Lowe, Peter T. Corbett, Peter Murray-Rust, Robert C. Glen

J. Chem. Inf. Model., 2011

CMLLite: a design philosophy for CML.

Joe Townsend, Peter Murray-Rust

J. Cheminformatics, 2011

Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on.

Noel M. O'Boyle, Rajarshi Guha, Egon L. Willighagen, Sam E. Adams, Jonathan Alvarsson, Jean-Claude Bradley, Igor V. Filippov, Robert M. Hanson, Marcus D. Hanwell, Geoffrey R. Hutchison, Craig A. James, Nina Jeliazkova, Andrew S. I. D. Lang, Karol M. Langner, David C. Lonie, Daniel M. Lowe, Jérôme Pansanel, Dmitry Pavlov, Ola Spjuth, Christoph Steinbeck, Adam L. Tenderholt, Kevin J. Theisen, Peter Murray-Rust

J. Cheminformatics, 2011

The semantics of Chemical Markup Language (CML): dictionaries and conventions.

Peter Murray-Rust, Joe Townsend, Sam E. Adams, Weerapong Phadungsukanan, Jens Thomas

J. Cheminformatics, 2011

CML: Evolution and design.

Peter Murray-Rust, Henry S. Rzepa

J. Cheminformatics, 2011

The semantic architecture of the World-Wide Molecular Matrix (WWMM).

Peter Murray-Rust, Sam E. Adams, Jim Downing, Joe Townsend, Yong Zhang

J. Cheminformatics, 2011

Semantic science and its communication - a personal view.

Peter Murray-Rust

J. Cheminformatics, 2011

Open Bibliography for Science, Technology, and Medicine.

Richard Jones, Mark MacGillivray, Peter Murray-Rust, Jim Pitman, Peter Sefton, Ben O'Steen, William Waites

J. Cheminformatics, 2011

OSCAR4: a flexible architecture for chemical text-mining.

David M. Jessop, Sam E. Adams, Egon L. Willighagen, Lezan Hawizy, Peter Murray-Rust

J. Cheminformatics, 2011

Mining chemical information from open patents.

David M. Jessop, Sam E. Adams, Peter Murray-Rust

J. Cheminformatics, 2011

ChemicalTagger: A tool for semantic text-mining in chemistry.

Lezan Hawizy, David M. Jessop, Nico Adams, Peter Murray-Rust

J. Cheminformatics, 2011

Ami - The chemist's amanuensis.

Brian Brooks, Adam L. Thorn, Matthew Smith, Peter Matthews, Shaoming Chen, Ben O'Steen, Sam E. Adams, Joe Townsend, Peter Murray-Rust

J. Cheminformatics, 2011

The Quixote project: Collaborative and Open Quantum Chemistry data management in the Internet age.

Sam E. Adams, Pablo de Castro, Pablo Echenique, Jorge Estrada, Marcus D. Hanwell, Peter Murray-Rust, Paul Sherwood, Jens Thomas, Joe Townsend

J. Cheminformatics, 2011

2010

SPECTRa-T: Machine-Based Data Extraction and Semantic Searching of Chemistry e-Theses.

Jim Downing, Matt J. Harvey, Peter B. Morgan, Peter Murray-Rust, Henry S. Rzepa, Diana C. Stewart, Alan P. Tonge, Joe Townsend

J. Chem. Inf. Model., 2010

2009

CHIC - Converting Hamburgers into Cows.

Joseph A. Townsend, Jim Downing, Peter Murray-Rust

Proceedings of the Fifth International Conference on e-Science, 2009

Towards Lensfield - Data Management, Processing and Semantic Publication for Vernacular e-Science.

Nick Day, Jim Downing, Lezan Hawizy, Nico Adams, Peter Murray-Rust

Proceedings of the Fifth International Conference on e-Science, 2009

2008

SPECTRa: The Deposition and Validation of Primary Chemistry Research Data in Digital Repositories.

Jim Downing, Peter Murray-Rust, Alan P. Tonge, Peter B. Morgan, Henry S. Rzepa, Fiona Cotterill, Nick Day, Matt J. Harvey

J. Chem. Inf. Model., 2008

Chemical Markup, XML and the World-Wide Web. 8. Polymer Markup Language.

Nico Adams, Jerry Winter, Peter Murray-Rust, Henry S. Rzepa

J. Chem. Inf. Model., 2008

Language Resources and Chemical Informatics.

C. J. Rupp, Ann A. Copestake, Peter T. Corbett, Peter Murray-Rust, Advaith Siddharthan, Simone Teufel, Benjamin Waldron

Proceedings of the International Conference on Language Resources and Evaluation, 2008

2007

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms.

Gemma L. Holliday, Daniel E. Almonacid, Gail J. Bartlett, Noel M. O'Boyle, James W. Torrance, Peter Murray-Rust, John B. O. Mitchell, Janet M. Thornton

Nucleic Acids Res., 2007

Chemical Markup, XML, and the World Wide Web, 7. CMLSpect, an XML Vocabulary for Spectral Data.

Stefan Kuhn, Tobias Helmus, Robert J. Lancashire, Peter Murray-Rust, Henry S. Rzepa, Christoph Steinbeck, Egon L. Willighagen

J. Chem. Inf. Model., 2007

Bioclipse: an open source workbench for chemo- and bioinformatics.

Ola Spjuth, Tobias Helmus, Egon L. Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter Murray-Rust, Christoph Steinbeck, Jarl E. S. Wikberg

BMC Bioinform., 2007

Mathematics and Scientific Markup.

Peter Murray-Rust

Proceedings of the Towards Mechanized Mathematical Assistants, 14th Symposium, 2007

2006

Chemical Markup, XML, and the World Wide Web. 6. CMLReact, an XML Vocabulary for Chemical Reactions.

Gemma L. Holliday, Peter Murray-Rust, Henry S. Rzepa

J. Chem. Inf. Model., 2006

The Blue Obelisk-Interoperability in Chemical Informatics.

Rajarshi Guha, Michael T. Howard, Geoffrey R. Hutchison, Peter Murray-Rust, Henry S. Rzepa, Christoph Steinbeck, Jörg K. Wegner, Egon L. Willighagen

J. Chem. Inf. Model., 2006

Information Delivery in Computational Mineral Science: The eMinerals Data Handling System.

Toby O. H. White, Martin T. Dove, Richard Paul Bruin, Kat F. Austen, Andrew M. Walker, Emilio Artacho, Arnaud Marmier, Steve C. Parker, Peter Murray-Rust, Andrew D. Walkingshaw, Philip A. Couch, Rik P. Tyer, Ilian T. Todorov, Dan J. Wilson

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

Computational Grids for Mid-Sized Collaborative Projects: The eMinerals Experience.

Martin T. Dove, Toby O. H. White, Andrew M. Walker, Richard Paul Bruin, Kat F. Austen, Emilio Artacho, L. A. Sullivan, Mark Calleja, Matthew G. Tucker, Rik P. Tyer, Philip A. Couch, Kerstin Kleese van Dam, R. J. Allan, Ilian T. Todorov, Clovis Chapman, Wolfgang Emmerich, Arnaud Marmier, Steve C. Parker, M. O. Blanchard, C. Richard A. Catlow, Z. Du, N. de Leeuw, Gareth J. Lewis, Vassil Alexandrov, M. Alfredsson, J. P. Brodholt, Peter Murray-Rust

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

High-Throughput Identification of Chemistry in Life Science Texts.

Peter T. Corbett, Peter Murray-Rust

Proceedings of the Computational Life Sciences II, 2006

2005

Communication and re-use of chemical information in bioscience.

Peter Murray-Rust, John B. O. Mitchell, Henry S. Rzepa

BMC Bioinform., 2005

Chemistry in Bioinformatics.

Peter Murray-Rust, John B. O. Mitchell, Henry S. Rzepa

BMC Bioinform., 2005

MACiE: a database of enzyme reaction mechanisms.

Gemma L. Holliday, Gail J. Bartlett, Daniel E. Almonacid, Noel M. O'Boyle, Peter Murray-Rust, Janet M. Thornton, John B. O. Mitchell

Bioinform., 2005

2004

The Next Big Thing: From Hypermedia to Datuments.

Peter Murray-Rust, Henry S. Rzepa

J. Digit. Inf., 2004

Chemical Markup, XML, and the World Wide Web. 5. Applications of Chemical Metadata in RSS Aggregators.

Peter Murray-Rust, Henry S. Rzepa, Mark J. Williamson, Egon L. Willighagen

J. Chem. Inf. Model., 2004

2003

XML for scientific publishing.

Peter Murray-Rust, Henry S. Rzepa

OCLC Syst. Serv., 2003

Chemical Markup, XML, and the World Wide Web. 4. CML Schema.

Peter Murray-Rust, Henry S. Rzepa

J. Chem. Inf. Comput. Sci., 2003

2002

STMML. A markup language for scientific, technical and medical publishing.

Peter Murray-Rust, Henry S. Rzepa

Data Sci. J., 2002

Scientific publications in XML - towards a global knowledge base.

Peter Murray-Rust, Henry S. Rzepa

Data Sci. J., 2002

2001

A new publishing paradigm: STM articles as part of the semantic web.

Henry S. Rzepa, Peter Murray-Rust

Learn. Publ., 2001

Chemical Markup, XML and the World-Wide Web. 2. Information Objects and the CMLDOM.

Peter Murray-Rust, Henry S. Rzepa

J. Chem. Inf. Comput. Sci., 2001

Chemical Markup, XML, and the World-Wide Web. 3. Toward a Signed Semantic Chemical Web of Trust.

Georgios V. Gkoutos, Peter Murray-Rust, Henry S. Rzepa, Michael Wright

J. Chem. Inf. Comput. Sci., 2001

1999

Chemical Markup, XML, and the Worldwide Web. 1. Basic Principles.

Peter Murray-Rust, Henry S. Rzepa

J. Chem. Inf. Comput. Sci., 1999

1998

The Application of Chemical Multipurpose Internet Mail Extensions (Chemical MIME) Internet Standards to Electronic Mail and World Wide Web Information Exchange.

Henry S. Rzepa, Peter Murray-Rust, Benjamin J. Whitaker

J. Chem. Inf. Comput. Sci., 1998

1997

JUMBO: An Object-Based XML Browser.

Peter Murray-Rust

World Wide Web J., 1997

Chemical Markup Language: A Simple Introduction to Structured Documents.

Peter Murray-Rust

World Wide Web J., 1997