Peter L. Freddolino

According to our database, Peter L. Freddolino authored at least 7 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations.

Mariano Spivak, John E. Stone, João Ribeiro, Jan Saam, Peter L. Freddolino, Rafael C. Bernardi, Emad Tajkhorshid

J. Chem. Inf. Model., August, 2023

2022

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction.

Yi-Heng Zhu, Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong-Jun Yu, Yang Zhang

Genom. Proteom. Bioinform., October, 2022

LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.

Wei Zheng, Qiqige Wuyun, Xiaogen Zhou, Yang Li, Peter L. Freddolino, Yang Zhang

Nucleic Acids Res., 2022

2020

Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons.

Xiaoqiong Wei, Chengxin Zhang, Peter L. Freddolino, Yang Zhang, Zhiyong Lu

Bioinform., 2020

2017

COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information.

Chengxin Zhang, Peter L. Freddolino, Yang Zhang

Nucleic Acids Res., 2017

2011

Stereochemical errors and their implications to molecular dynamics simulations.

Eduard Schreiner, Leonardo G. Trabuco, Peter L. Freddolino, Klaus Schulten

BMC Bioinform., 2011

2007

Accelerating molecular modeling applications with graphics processors.

John E. Stone, James C. Phillips, Peter L. Freddolino, David J. Hardy, Leonardo G. Trabuco, Klaus Schulten

J. Comput. Chem., 2007