Peter J. Thomas

Orcid: 0000-0001-7533-6770

Affiliations:
  • Case Western Reserve University, Cleveland, Ohio, USA
  • Oberlin College, OH, USA (2004 - 2006)
  • Salk Institute, San Diego, CA, USA (2000 - 2004)
  • University of Chicago, IL, USA (PhD 2000)


According to our database1, Peter J. Thomas authored at least 55 papers between 2002 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
COVID-19 and silent hypoxemia in a minimal closed-loop model of the respiratory rhythm generator.
Biol. Cybern., August, 2024

Fitness Value of Subjective Information for Living Organisms.
Proceedings of the 11th Annual ACM International Conference on Nanoscale Computing and Communication, 2024

2023
Tutorial: using NEURON for neuromechanical simulations.
Frontiers Comput. Neurosci., September, 2023

Sensitivity to Control Signals in Triphasic Rhythmic Neural Systems: A Comparative Mechanistic Analysis via Infinitesimal Local Timing Response Curves.
Neural Comput., June, 2023

A Metric to Quantify Subjective Information in Biological Gradient Sensing.
Proceedings of the IEEE Global Communications Conference, 2023

2022
Explicitly Solvable Continuous-Time Inference for Partially Observed Markov Processes.
IEEE Trans. Signal Process., 2022

The Network HHD: Quantifying Cyclic Competition in Trait-Performance Models of Tournaments.
SIAM Rev., 2022

Cheater suppression and stochastic clearance through quorum sensing.
PLoS Comput. Biol., 2022

Subjective Information and Survival in a Simulated Biological System.
Entropy, 2022

Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems.
Biol. Cybern., 2022

Quantitative comparison of the mean-return-time phase and the stochastic asymptotic phase for noisy oscillators.
Biol. Cybern., 2022

Stochastic oscillators in biology: introduction to the special issue.
Biol. Cybern., 2022

Mean-return-time phase of a stochastic oscillator provides an approximate renewal description for the associated point process.
Biol. Cybern., 2022

GymSlug: Deep Reinforcement Learning Toward Bio-inspired Control Based on Aplysia californica Feeding.
Proceedings of the Biomimetic and Biohybrid Systems - 11th International Conference, 2022

A Synthetic Nervous System with Coupled Oscillators Controls Peristaltic Locomotion.
Proceedings of the Biomimetic and Biohybrid Systems - 11th International Conference, 2022

2021
Shape versus Timing: Linear Responses of a Limit Cycle with Hard Boundaries under Instantaneous and Static Perturbation.
SIAM J. Appl. Dyn. Syst., 2021

Dynamical consequences of sensory feedback in a half-center oscillator coupled to a simple motor system.
Biol. Cybern., 2021

Correction to: Control for multifunctionality: bioinspired control based on feeding in Aplysia californica.
Biol. Cybern., 2021

Correction to: Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding.
Biol. Cybern., 2021

Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding.
Biol. Cybern., 2021

Biological Cybernetics: 60 years and more to come.
Biol. Cybern., 2021

Subjective Information in Life Processes: A Computational Case Study.
Proceedings of the NANOCOM '21: The Eighth Annual ACM International Conference on Nanoscale Computing and Communication, Virtual Event, Italy, September 7, 2021

2020
A Partial Differential Equation for the Mean-Return-Time Phase of Planar Stochastic Oscillators.
SIAM J. Appl. Math., 2020

Fast and Accurate Langevin Simulations of Stochastic Hodgkin-Huxley Dynamics.
Neural Comput., 2020

Control for multifunctionality: bioinspired control based on feeding in Aplysia californica.
Biol. Cybern., 2020

A Renewed Vision for Biological Cybernetics.
Biol. Cybern., 2020

Robotics Application of a Method for Analytically Computing Infinitesimal Phase Response Curves.
Proceedings of the Biomimetic and Biohybrid Systems - 9th International Conference, 2020

2019
Control theory in biology and medicine - Introduction to the special issue.
Biol. Cybern., 2019

Linear Noise Approximation of Intensity-Driven Signal Transduction Channels.
Proceedings of the 2019 IEEE Global Communications Conference, 2019

2018
The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors.
IEEE Trans. Mol. Biol. Multi Scale Commun., 2018

Stochastic shielding and edge importance for Markov chains with timescale separation.
PLoS Comput. Biol., 2018

Welcome from the new Editor(s)-in-Chief.
Biol. Cybern., 2018

Thermodynamic Properties of Molecular Communication.
Proceedings of the 2018 IEEE International Symposium on Information Theory, 2018

Experimental Validation of a Closed-Loop Respiratory Control Model using Dynamic Clamp.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

2017
Robustness, flexibility, and sensitivity in a multifunctional motor control model.
Biol. Cybern., 2017

2016
Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part II.
IEEE Trans. Mol. Biol. Multi Scale Commun., 2016

Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part 1.
IEEE Trans. Mol. Biol. Multi Scale Commun., 2016

Capacity of a Simple Intercellular Signal Transduction Channel.
IEEE Trans. Inf. Theory, 2016

Entropy of the Sum of Two Independent, Non-Identically-Distributed Exponential Random Variables.
CoRR, 2016

Shannon capacity of signal transduction for multiple independent receptors.
Proceedings of the IEEE International Symposium on Information Theory, 2016

Finite-state channel models for signal transduction in neural systems.
Proceedings of the 2016 IEEE International Conference on Acoustics, 2016

2015
The significance of dynamical architecture for adaptive responses to mechanical loads during rhythmic behavior.
J. Comput. Neurosci., 2015

Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics.
J. Comput. Neurosci., 2015

Commentary on Structured chaos shapes spike-response noise entropy in balanced neural networks, by Lajoie, Thivierge, and Shea-Brown.
Frontiers Comput. Neurosci., 2015

Information theory of intercellular signal transduction.
Proceedings of the 49th Asilomar Conference on Signals, Systems and Computers, 2015

2012
Phase Resetting in an Asymptotically Phaseless System: On the Phase Response of Limit Cycles Verging on a Heteroclinic Orbit.
SIAM J. Appl. Dyn. Syst., 2012

Multiple Spike Time Patterns Occur at Bifurcation Points of Membrane Potential Dynamics.
PLoS Comput. Biol., 2012

Random local temporal structure of category fluency responses.
J. Comput. Neurosci., 2012

Spontaneous autoresuscitation in a model of respiratory control.
Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2012

2011
Finding the Event Structure of Neuronal Spike Trains.
Neural Comput., 2011

2010
Information Maximization Fails to Maximize Expected Utility in a Simple Foraging Model
CoRR, 2010

2006
An Information Theoretic Framework for Eukaryotic Gradient Sensing.
Proceedings of the Advances in Neural Information Processing Systems 19, 2006

2003
Reliability and bifurcation in neurons driven by multiple sinusoids.
Neurocomputing, 2003

The Diffusion-Limited Biochemical Signal-Relay Channel.
Proceedings of the Advances in Neural Information Processing Systems 16 [Neural Information Processing Systems, 2003

2002
What Geometric Visual Hallucinations Tell Us about the Visual Cortex.
Neural Comput., 2002


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