Peter J. Park

Orcid: 0000-0001-9378-960X

According to our database1, Peter J. Park authored at least 35 papers between 2001 and 2024.

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Bibliography

2024
On the Connection Between Non-negative Matrix Factorization and Latent Dirichlet Allocation.
CoRR, 2024

2022
Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs.
Bioinform., 2022

2021
BamSnap: a lightweight viewer for sequencing reads in BAM files.
Bioinform., 2021

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.
Bioinform., 2021

2020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
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Nat., 2020

Genomic basis for RNA alterations in cancer.
Nat., 2020

GiniQC: a measure for quantifying noise in single-cell Hi-C data.
Bioinform., 2020

2019
Tibanna: software for scalable execution of portable pipelines on the cloud.
Bioinform., 2019

2016
Evaluation of somatic copy number estimation tools for whole-exome sequencing data.
Briefings Bioinform., 2016

2015
Standard for improving emergency information interoperability: the HL7 data elements for emergency department systems.
J. Am. Medical Informatics Assoc., 2015

EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering.
BMC Bioinform., 2015

hiHMM: Bayesian non-parametric joint inference of chromatin state maps.
Bioinform., 2015

2014
Comparative analysis of metazoan chromatin organization Open.
Nat., 2014

2013
Nozzle: a report generation toolkit for data analysis pipelines.
Bioinform., 2013

The HL7 Standards-Based Model of Emergency Care Information.
Proceedings of the MEDINFO 2013, 2013

2012
StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization.
Comput. Graph. Forum, 2012

The HL7 Specification of the Data Elements for Emergency Department Systems (DEEDS).
Proceedings of the AMIA 2012, 2012

2010
Quantized correlation coefficient for measuring reproducibility of ChIP-chip data.
BMC Bioinform., 2010

rSW-seq: Algorithm for detection of copy number alterations in deep sequencing data.
BMC Bioinform., 2010

2009
A permutation test for determining significance of clusters with applications to spatial and gene expression data.
Comput. Stat. Data Anal., 2009

Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance.
Bioinform., 2009

2008
nuScore: a web-interface for nucleosome positioning predictions.
Bioinform., 2008

Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes.
Bioinform., 2008

CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms.
Bioinform., 2008

2007
Normalization and experimental design for ChIP-chip data.
BMC Bioinform., 2007

2006
A multivariate approach for integrating genome-wide expression data and biological knowledge.
Bioinform., 2006

2005
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data.
Bioinform., 2005

CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.
Bioinform., 2005

2004
Combining gene expression data from different generations of oligonucleotide arrays.
BMC Bioinform., 2004

2003
Power comparisons for disease clustering tests.
Comput. Stat. Data Anal., 2003

Functional Relationships Between Gene Pairs in Oral Squamous Cell Carcinoma.
Proceedings of the AMIA 2003, 2003

2002
Comparing expression profiles of genes with similar promoter regions.
Bioinform., 2002

Linking gene expression data with patient survival times using partial least squares.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

Gene expression levels in different stages of progression in oral squamous cell carcinoma.
Proceedings of the AMIA 2002, 2002

2001
A Nonparametric Scoring Algorithm for Identifying Informative Genes from Microarray Data.
Proceedings of the 6th Pacific Symposium on Biocomputing, 2001


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