Peter J. Ortoleva

According to our database, Peter J. Ortoleva authored at least 12 papers between 2002 and 2016.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2016

ProtoMD: A prototyping toolkit for multiscale molecular dynamics.

Endre T. Somogyi, Andrew Abi Mansour, Peter J. Ortoleva

Comput. Phys. Commun., 2016

2015

A Review of Two Multiscale Methods for the Simulation of Macromolecular Assemblies: Multiscale Perturbation and Multiscale Factorization.

Stephen Pankavich, Peter J. Ortoleva

Comput., 2015

2012

Multiscale Macromolecular Simulation: Role of Evolving Ensembles.

Abhishek Singharoy, Harshad Joshi, Peter J. Ortoleva

J. Chem. Inf. Model., 2012

2009

Molecular dynamics/order parameter extrapolation for bionanosystem simulations.

Yinglong Miao, Peter J. Ortoleva

J. Comput. Chem., 2009

2007

Transcriptional Regulatory Networks via Gene Ontology and Expression Data.

Kagan Tuncay, Lisa Ensman, Jingjun Sun, Alaa Abi-Haidar, Frank Stanley, Michael Trelinski, Peter J. Ortoleva

Silico Biol., 2007

Chromosome segregation in Escherichia coli division: A free energy-driven string model.

Jianmiao Fan, Kagan Tuncay, Peter J. Ortoleva

Comput. Biol. Chem., 2007

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory.

Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva

BMC Bioinform., 2007

Transcriptional regulatory network discovery via multiple method integration: application to <i>e. coli </i>K12.

Jingjun Sun, Kagan Tuncay, Alaa Abi-Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter J. Ortoleva

Algorithms Mol. Biol., 2007

2006

Parallel implementation of a velocity-stress staggered-grid finite-difference method for 2-D poroelastic wave propagation.

Dong-Hoon Sheen, Kagan Tuncay, Chang-Eob Baag, Peter J. Ortoleva

Comput. Geosci., 2006

2004

Efficient solution technique for solving the Poisson-Boltzmann equation.

Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Ortoleva

J. Comput. Chem., 2004

2003

Simulating cellular dynamics through a coupled transcription, translation, metabolic model.

Elizabeth L. Weitzke, Peter J. Ortoleva

Comput. Biol. Chem., 2003

2002

New space warping method for the simulation of large-scale macromolecular conformational changes.

Khuloud Jaqaman, Peter J. Ortoleva

J. Comput. Chem., 2002