Peter A. C. 't Hoen

According to our database, Peter A. C. 't Hoen authored at least 26 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.

Xiaofeng Liao, Thomas H. A. Ederveen, Anna Niehues, Casper de Visser, Junda Huang, Firdaws Badmus, Cenna Doornbos, Yuliia Orlova, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen

J. Biomed. Semant., December, 2024

FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.

Xiaofeng Liao, Yuliia Orlova, Cenna Doornbos, Anna Niehues, Casper de Visser, Junda Huang, Thomas H. A. Ederveen, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen

Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024

Ontology enhanced FAIR Data Point searches.

Xiaofeng Liao, Coos Baakman, Kees Burger, Luiz Olavo Bonino da Silva Santos, Peter A. C. 't Hoen

Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024

2023

A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR.

Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis

Data Sci. J., January, 2023

Ten quick tips for building FAIR workflows.

Casper de Visser, Lennart F. Johansson, Purva Kulkarni, Hailiang Mei, Pieter B. T. Neerincx, K. Joeri van der Velde, Peter Horvatovich, Alain J. van Gool, Morris A. Swertz, Peter A. C. 't Hoen, Anna Niehues

PLoS Comput. Biol., 2023

2021

De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data.

Martijn G. Kersloot, Annika Jacobsen, Karlijn H. J. Groenen, Bruna dos Santos Vieira, Rajaram Kaliyaperumal, Ameen Abu-Hanna, Ronald Cornet, Peter A. C. 't Hoen, Marco Roos, Leo J. Schultze Kool, Derk L. Arts

J. Biomed. Informatics, 2021

2020

Applying the FAIR Data Principles to the Registry of Vascular Anomalies (VASCA).

Bruna dos Santos Vieira, Karlijn H. J. Groenen, Peter A. C. 't Hoen, Annika Jacobsen, Marco Roos, Rajaram Kaliyaperumal, Martijn G. Kersloot, Ronald Cornet, Leo J. Schultze Kool

Proceedings of the dHealth 2020 - Biomedical Informatics for Health and Care, 2020

2017

Semantic Knowledge Graph Network Features for Drug Repurposing.

Tareq B. Malas, Roman Kudrin, Sergei Starikov, Dorien Peters, Marco Roos, Peter A. C. 't Hoen, Kristina M. Hettne

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2016

Consistency of biological networks inferred from microarray and sequencing data.

Veronica Vinciotti, Ernst C. Wit, Rick Jansen, Eco J. C. de Geus, Brenda W. J. H. Penninx, Dorret I. Boomsma, Peter A. C. 't Hoen

BMC Bioinform., 2016

2015

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites.

Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2014

A promoter-level mammalian expression atlas.

The Fantom Consortium, RIKEN PMII, RIKEN CLST (DGT), Alistair R. R. Forrest, Hideya Kawaji, Michael Rehli, J. Kenneth Baillie, Michiel J. L. de Hoon, Vanja Haberle, Timo Lassmann, Ivan V. Kulakovskiy, Marina Lizio, Masayoshi Itoh, Robin Andersson, Christopher J. Mungall, Terrence F. Meehan, Sebastian Schmeier, Nicolas Bertin, Mette Jørgensen, Emmanuel Dimont, Erik Arner, Christian Schmidl, Ulf Schaefer, Yulia A. Medvedeva, Charles Plessy, Morana Vitezic, Jessica Severin, Colin A. M. Semple, Yuri Ishizu, Robert S. Young, Margherita Francescatto, Intikhab Alam, Davide Albanese, Gabriel M. Altschuler, Takahiro Arakawa, John A. C. Archer, Peter Arner, Magda Babina, Sarah Rennie, Piotr J. Balwierz, Anthony G. Beckhouse, Swati Pradhan-Bhatt, Judith A. Blake, Antje Blumenthal, Beatrice Bodega, Alessandro Bonetti, James Briggs, Frank Brombacher, A. Maxwell Burroughs, Andrea Califano, Carlo V. Cannistraci, Daniel Carbajo, Yun Chen, Marco Chierici, Yari Ciani, Hans Clevers, Emiliano Dalla, Carrie A. Davis, Michael Detmar, Alexander D. Diehl, Taeko Dohi, Finn Drabløs, Albert S. B. Edge, Matthias Edinger, Karl Ekwall, Mitsuhiro Endoh, Hideki Enomoto, Michela Fagiolini, Lynsey Fairbairn, Hai Fang, Mary C. Farach-Carson, Geoffrey J. Faulkner, Alexander V. Favorov, Malcolm E. Fisher, Martin C. Frith, Rie Fujita, Shiro Fukuda, Cesare Furlanello, Masaaki Furuno, Jun-ichi Furusawa, Teunis B. Geijtenbeek, Andrew P. Gibson, Thomas R. Gingeras, Daniel Goldowitz, Julian Gough, Sven Guhl, Reto Guler, Stefano Gustincich, Thomas J. Ha, Masahide Hamaguchi, Mitsuko Hara, Matthias Harbers, Jayson Harshbarger, Akira Hasegawa, Yuki Hasegawa, Takehiro Hashimoto, Meenhard Herlyn, Kelly J. Hitchens, Shannan J. Ho Sui, Oliver M. Hofmann, Ilka Hoof, Fumi Hori, Lukasz Huminiecki, Kei Iida, Tomokatsu Ikawa, Boris R. Jankovic, Hui Jia, Anagha Joshi, Giuseppe Jurman, Bogumil Kaczkowski, Chieko Kai, Kaoru Kaida, Ai Kaiho, Kazuhiro Kajiyama, Mutsumi Kanamori-Katayama, Artem S. Kasianov, Takeya Kasukawa, Shintaro Katayama, Sachi Kato, Shuji Kawaguchi, Hiroshi Kawamoto, Yuki I. Kawamura, Tsugumi Kawashima, Judith S. Kempfle, Tony J. Kenna, Juha Kere, Levon M. Khachigian, Toshio Kitamura, S. Peter Klinken, Alan J. Knox, Miki Kojima, Soichi Kojima, Naoto Kondo, Haruhiko Koseki, Shigeo Koyasu, Sarah Krampitz, Atsutaka Kubosaki, Andrew T. Kwon, Jeroen F. J. Laros, Weonju Lee, Andreas Lennartsson, Kang Li, Berit Lilje, Leonard Lipovich, Alan Mackay-Sim, Ri-ichiroh Manabe, Jessica Cara Mar, Benoit Marchand, Anthony Mathelier, Niklas Mejhert, Alison M. Meynert, Yosuke Mizuno, David A. de Lima Morais, Hiromasa Morikawa, Mitsuru Morimoto, Kazuyo Moro, Efthymios Motakis, Hozumi Motohashi, Christine Mummery, Mitsuyoshi Murata, Sayaka Nagao-Sato, Yutaka Nakachi, Fumio Nakahara, Toshiyuki Nakamura, Yukio Nakamura, Kenichi Nakazato, Erik van Nimwegen, Noriko Ninomiya, Hiromi Nishiyori, Shohei Noma, Tadasuke Nozaki, Soichi Ogishima, Naganari Ohkura, Hiroko Ohmiya, Hiroshi Ohno, Mitsuhiro Ohshima, Mariko Okada-Hatakeyama, Yasushi Okazaki, Valerio Orlando, Dmitry A. Ovchinnikov, Arnab Pain, Robert Passier, Margaret Patrikakis, Helena Persson, Silvano Piazza, James G. D. Prendergast, Owen J. L. Rackham, Jordan A. Ramilowski, Mamoon Rashid, Timothy Ravasi, Patrizia Rizzu, Marco Roncador, Sugata Roy, Morten B. Rye, Eri Saijyo, Antti Sajantila, Akiko Saka, Shimon Sakaguchi, Mizuho Sakai, Hiroki Sato, Hironori Sato, Suzana Savvi, Alka Saxena, Claudio Schneider, Erik A. Schultes, Gundula G. Schulze-Tanzil, Anita Schwegmann, Thierry Sengstag, Guojun Sheng, Hisashi Shimoji, Yishai Shimoni, Jay W. Shin, Christophe Simon, Daisuke Sugiyama, Takaaki Sugiyama, Masanori Suzuki, Naoko Suzuki, Rolf K. Swoboda, Peter A. C. 't Hoen, Michihira Tagami, Naoko Takahashi, Jun Takai, Hiroshi Tanaka, Hideki Tatsukawa, Zuotian Tatum, Mark Thompson, Hiroo Toyoda, Tetsuro Toyoda, Eivind Valen, Marc van de Wetering, Linda M. van den Berg, Roberto Verardo, Dipti Vijayan, Ilya E. Vorontsov, Wyeth W. Wasserman, Shoko Watanabe, Christine A. Wells, Louise N. Winteringham, Ernst Wolvetang, Emily J. Wood, Yoko Yamaguchi, Masayuki Yamamoto, Misako Yoneda, Yohei Yonekura, Shigehiro Yoshida, Susan E. Zabierowski, Peter G. Zhang, Xiaobei Zhao, Silvia Zucchelli, Kim M. Summers, Harukazu Suzuki, Carsten O. Daub, Jun Kawai, Peter Heutink, Winston Hide, Tom C. Freeman, Boris Lenhard, Vladimir B. Bajic, Martin S. Taylor, Vsevolod J. Makeev, Albin Sandelin, David A. Hume, Piero Carninci, Yoshihide Hayashizaki

Nat., 2014

Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library.

Beibei Ru, Peter A. C. 't Hoen, Fulei Nie, Hao Lin, Feng-Biao Guo, Jian Huang

J. Bioinform. Comput. Biol., 2014

Structuring research methods and data with the research object model: genomics workflows as a case study.

Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos

J. Biomed. Semant., 2014

2013

Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data.

Yanchun Bao, Veronica Vinciotti, Ernst Wit, Peter A. C. 't Hoen

BMC Bioinform., 2013

2012

PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data.

Yanju Zhang, Eric-Wubbo Lameijer, Peter A. C. 't Hoen, Zemin Ning, P. Eline Slagboom, Kai Ye

Bioinform., 2012

2011

Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy.

Seyed Yahya Anvar, Allan Tucker, Veronica Vinciotti, Andrea Venema, Gert-Jan B. van Ommen, Silvere M. van der Maarel, Vered Raz, Peter A. C. 't Hoen

PLoS Comput. Biol., 2011

mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance.

Peter A. C. 't Hoen, Michael Hirsch, Emile J. de Meijer, Renée X. de Menezes, Gert-Jan B. van Ommen, Johan T. den Dunnen

Nucleic Acids Res., 2011

Literature-aided interpretation of gene expression data with the weighted global test.

Rob Jelier, Jelle J. Goeman, Kristina M. Hettne, Martijn J. Schuemie, Johan T. den Dunnen, Peter A. C. 't Hoen

Briefings Bioinform., 2011

2010

The identification of informative genes from multiple datasets with increasing complexity.

Seyed Yahya Anvar, Peter A. C. 't Hoen, Allan Tucker

BMC Bioinform., 2010

2009

Literature-based priors for gene regulatory networks.

Emma Steele, Allan Tucker, Peter A. C. 't Hoen, Martijn J. Schuemie

Bioinform., 2009

2008

Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.

Alexander E. Ivliev, Peter A. C. 't Hoen, Michel P. Villerius, Johan T. den Dunnen, Bernd W. Brandt

Nucleic Acids Res., 2008

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease.

Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg, Johan T. den Dunnen, Gert-Jan B. van Ommen, Jan A. Kors, Barend Mons

BMC Bioinform., 2008

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.

Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Gert-Jan B. van Ommen, Johan T. den Dunnen, Peter A. C. 't Hoen

BMC Bioinform., 2008

2006

Temporal Bayesian classifiers for modelling muscular dystrophy expression data.

Allan Tucker, Peter A. C. 't Hoen, Veronica Vinciotti, Xiaohui Liu

Intell. Data Anal., 2006

Exploiting the full power of temporal gene expression profiling through a new statistical test: Application to the analysis of muscular dystrophy data.

Veronica Vinciotti, Xiaohui Liu, Rolf Turk, Emile J. de Meijer, Peter A. C. 't Hoen

BMC Bioinform., 2006

2005

Bayesian Network Classifiers for Time-Series Microarray Data.

Allan Tucker, Veronica Vinciotti, Peter A. C. 't Hoen, Xiaohui Liu

Proceedings of the Advances in Intelligent Data Analysis VI, 2005