Peng Qiu

Orcid: 0000-0003-3256-0734

According to our database1, Peng Qiu authored at least 69 papers between 2004 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Gene representation bias in spatial transcriptomics.
J. Bioinform. Comput. Biol., June, 2024

Integrative multi-omics analyses reveal vesicle transport as a potential target for thoracic aortic aneurysm.
Comput. Biol. Medicine, March, 2024

Quantifying the clusterness and trajectoriness of single-cell RNA-seq data.
PLoS Comput. Biol., February, 2024

BASES: Large-scale Web Search User Simulation with Large Language Model based Agents.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2024, 2024

2023
Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations.
J. Comput. Biol., July, 2023

Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts.
Frontiers Bioinform., May, 2023

Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis.
Briefings Bioinform., May, 2023

Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures.
CoRR, 2023

Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents.
CoRR, 2023

UPCoL: Uncertainty-Informed Prototype Consistency Learning for Semi-supervised Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

2022
FUSSNet: Fusing Two Sources of Uncertainty for Semi-supervised Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

A contact pressure detection method of isolation switch based on Fiber Bragg Grating.
Proceedings of the 2nd International Conference on Control and Intelligent Robotics, 2022

2021
JSOM: Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters.
PLoS Comput. Biol., 2021

Prescreening and treatment of aortic dissection through an analysis of infinite-dimension data.
BioData Min., 2021

Immune-Microbiota Crosstalk Underlying Inflammatory Bowel Disease.
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021

Identification of Protein Markers Predictive of Drug-Specific Survival Outcome in Cancers.
Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021

2020
Classification of Antibacterial Peptides Using Long Short-Term Memory Recurrent Neural Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Shape-to-graph mapping method for efficient characterization and classification of complex geometries in biological images.
PLoS Comput. Biol., 2020

On-line reset control of a commercial-scale opposed multi-burner coal-water slurry gasification system using dynamic reduced-order model.
Comput. Chem. Eng., 2020

Leveraging TCGA gene expression data to build predictive models for cancer drug response.
BMC Bioinform., 2020

Image-based early predictions of functional properties in cell manufacturing.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Feature selection algorithms for predicting preeclampsia: A comparative approach.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Deconvolving multiplexed protease signatures with substrate reduction and activity clustering.
PLoS Comput. Biol., 2019

Radar and vision fusion for the real-time obstacle detection and identification.
Ind. Robot, 2019

An Efficient Cell Segmentation Algorithm Based on Unsupervised Clustering and Morphology.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
A High-Speed Imaging Method Based on Compressive Sensing for Sound Extraction Using a Low-Speed Camera.
Sensors, 2018

Experimental design and model reduction in systems biology.
Quant. Biol., 2018

Multi-objective service composition model based on cost-effective optimization.
Appl. Intell., 2018

2017
GDISC: a web portal for integrative analysis of gene-drug interaction for survival in cancer.
Bioinform., 2017

Research on flexible medium-voltage DC distribution technology based shore-to-ship power supply system.
Proceedings of the IECON 2017 - 43rd Annual Conference of the IEEE Industrial Electronics Society, Beijing, China, October 29, 2017

Comparison of DC fault handling strategies for hybrid HVDC system.
Proceedings of the IECON 2017 - 43rd Annual Conference of the IEEE Industrial Electronics Society, Beijing, China, October 29, 2017

Power loss and efficiency analysis of non-isolated weinberg converter.
Proceedings of the IECON 2017 - 43rd Annual Conference of the IEEE Industrial Electronics Society, Beijing, China, October 29, 2017

Graph-based extraction of shape features for leaf classification.
Proceedings of the 2017 IEEE Global Conference on Signal and Information Processing, 2017

Long short-term memory recurrent neural networks for antibacterial peptide identification.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

The relative importance of data points in systems biology and parameter estimation.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
Bridging Mechanistic and Phenomenological Models of Complex Biological Systems.
PLoS Comput. Biol., 2016

Identification of gene-drug interactions that impact patient survival in TCGA.
BMC Bioinform., 2016

2015
Unsupervised Discovery of Subspace Trends.
IEEE Trans. Pattern Anal. Mach. Intell., 2015

Flexible power distribution unit - A novel power electronic transformer development and demonstration for distribution system.
Proceedings of the IECON 2015, 2015

2014
BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2014

Improving the sensitivity of sample clustering by leveraging gene co-expression networks in variable selection.
BMC Bioinform., 2014

An iterative algorithm for sampling from manifolds.
Proceedings of the 2014 Winter Simulation Conference, 2014

Spectral feature selection and its application in high dimensional gene expression studies.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Identification of thresholds for dichotomizing DNA methylation data.
EURASIP J. Bioinform. Syst. Biol., 2013

TreeVis: A MATLAB-based tool for tree visualization.
Comput. Methods Programs Biomed., 2013

Unsupervised inference of arbor morphology progression for microglia from confocal microscope images.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

2012
Optimal experiment selection for parameter estimation in biological differential equation models.
BMC Bioinform., 2012

Identification of markers associated with global changes in DNA methylation regulation in cancers.
BMC Bioinform., 2012

CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data.
Bioinform., 2012

Toward exhaustive gating of flow cytometry data.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

Integrative analysis of methylation and gene expression data in TCGA.
Proceedings of the Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, 2012

2011
Reconstructing Directed Signed Gene Regulatory Network From Microarray Data.
IEEE Trans. Biomed. Eng., 2011

Discovering Biological Progression Underlying Microarray Samples.
PLoS Comput. Biol., 2011

2010
Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks.
J. Comput. Biol., 2010

Dynamic spectrum allocation engine based on DS theory and potential game.
Proceedings of the Sixth International Conference on Natural Computation, 2010

2009
An Activity-Subspace Approach for Estimating the Integrated Input Function and Relative Distribution Volume in PET Parametric Imaging.
IEEE Trans. Inf. Technol. Biomed., 2009

Simultaneous Class Discovery and Classification of Microarray Data Using Spectral Analysis.
J. Comput. Biol., 2009

Fast calculation of pairwise mutual information for gene regulatory network reconstruction.
Comput. Methods Programs Biomed., 2009

Modeling of Neuron Based on Single Electron Transistor.
Proceedings of the Second International Joint Conference on Computational Sciences and Optimization, 2009

2008
A robust method for QRS detection based on modified p-spectrum.
Proceedings of the IEEE International Conference on Acoustics, 2008

2007
Genomic processing for cancer classification and prediction - Abroad review of the recent advances in model-based genomoric and proteomic signal processing for cancer detection.
IEEE Signal Process. Mag., 2007

Dependence network modeling for biomarker identification.
Bioinform., 2007

2006
Polynomial model approach for resynchronization analysis of cell-cycle gene expression data.
Bioinform., 2006

Mixture principal component analysis for distribution volume parametric imaging in brain PET studies.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Dependence model and network for biomarker identification and cancer classification.
Proceedings of the 14th European Signal Processing Conference, 2006

2005
Ensemble dependence model for classification and prediction of cancer and normal gene expression data.
Bioinform., 2005

2004
Research on the Foundation Protocols of UCard.
Proceedings of the 2nd International Conference Computing, 2004

The Research of Storage Management and Address Mapping Mechanism in UCard.
Proceedings of the 2nd International Conference Computing, 2004


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