Pemra Ozbek
Orcid: 0000-0002-3043-0015
According to our database1,
Pemra Ozbek
authored at least 11 papers
between 2010 and 2022.
Collaborative distances:
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Bibliography
2022
Comput. Biol. Medicine, 2022
2021
Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations.
J. Chem. Inf. Model., 2021
Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers.
Frontiers Bioinform., 2021
2020
Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy.
J. Comput. Aided Mol. Des., 2020
Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles.
Comput. Biol. Chem., 2020
2019
ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism.
Nucleic Acids Res., 2019
2018
gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations.
Nucleic Acids Res., 2018
2016
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis.
J. Comput. Aided Mol. Des., 2016
Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study.
Comput. Biol. Chem., 2016
2015
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics.
PLoS Comput. Biol., 2015
2010
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.
Nucleic Acids Res., 2010