Pekka Ruusuvuori

According to our database, Pekka Ruusuvuori authored at least 45 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue.

Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Stephanie Robertson, Christian Marzahl, Chandler D. Gatenbee, Alexander R. A. Anderson, Marek Wodzinski, Artur Jurgas, Niccolò Marini, Manfredo Atzori, Henning Müller, Daniel Budelmann, Nick Weiss, Stefan Heldmann, Johannes Lotz, Jelmer M. Wolterink, Bruno De Santi, Abhijeet Patil, Amit Sethi, Satoshi Kondo, Satoshi Kasai, Kousuke Hirasawa, Mahtab Farrokh, Neeraj Kumar, Russell Greiner, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen

Medical Image Anal., 2024

2023

Deformation equivariant cross-modality image synthesis with paired non-aligned training data.

Joel Honkamaa, Umair Khan, Sonja Koivukoski, Mira Valkonen, Leena Latonen, Pekka Ruusuvuori, Pekka Marttinen

Medical Image Anal., December, 2023

The effect of neural network architecture on virtual H&E staining: Systematic assessment of histological feasibility.

Umair Khan, Sonja Koivukoski, Mira Valkonen, Leena Latonen, Pekka Ruusuvuori

Patterns, May, 2023

Improving Performance in Colorectal Cancer Histology Decomposition using Deep and Ensemble Machine Learning.

Fabi Prezja, Leevi Annala, Sampsa Kiiskinen, Suvi Lahtinen, Timo Ojala, Pekka Ruusuvuori, Teijo Kuopio

CoRR, 2023

Physical Color Calibration of Digital Pathology Scanners for Robust Artificial Intelligence Assisted Cancer Diagnosis.

Xiaoyi Ji, Richard Salmon, Nita Mulliqi, Umair Khan, Yinxi Wang, Anders Blilie, Henrik Olsson, Bodil Ginnerup Pedersen, Karina Dalsgaard Sørensen, Benedicte Parm Ulhøi, Svein Reidar Kjosavik, Emilius A. M. Janssen, Mattias Rantalainen, Lars Egevad, Pekka Ruusuvuori, Martin Eklund, Kimmo Kartasalo

CoRR, 2023

2022

Domain-specific transfer learning in the automated scoring of tumor-stroma ratio from histopathological images of colorectal cancer.

Liisa Petäinen, Juha P. Väyrynen, Pekka Ruusuvuori, Ilkka Pölönen, Sami Äyrämö, Teijo Kuopio

CoRR, 2022

ACROBAT - a multi-stain breast cancer histological whole-slide-image data set from routine diagnostics for computational pathology.

Philippe Weitz, Masi Valkonen, Leslie Solorzano, Circe Carr, Kimmo Kartasalo, Constance Boissin, Sonja Koivukoski, Aino Kuusela, Dusan Rasic, Yanbo Feng, Sandra Kristiane Sinius Pouplier, Abhinav Sharma, Kajsa Ledesma Eriksson, Leena Latonen, Anne-Vibeke Laenkholm, Johan Hartman, Pekka Ruusuvuori, Mattias Rantalainen

CoRR, 2022

Deformation equivariant cross-modality image synthesis with paired non-aligned training data.

Joel Honkamaa, Umair Khan, Sonja Koivukoski, Leena Latonen, Pekka Ruusuvuori, Pekka Marttinen

CoRR, 2022

2021

Generalized Fixation Invariant Nuclei Detection Through Domain Adaptation Based Deep Learning.

Mira Valkonen, Gunilla Högnäs, G. Steven Bova, Pekka Ruusuvuori

IEEE J. Biomed. Health Informatics, 2021

OpenPhi: an interface to access Philips iSyntax whole slide images for computational pathology.

Nita Mulliqi, Kimmo Kartasalo, Henrik Olsson, Xiaoyi Ji, Lars Egevad, Martin Eklund, Pekka Ruusuvuori

Bioinform., 2021

2020

Cytokeratin-Supervised Deep Learning for Automatic Recognition of Epithelial Cells in Breast Cancers Stained for ER, PR, and Ki-67.

Mira Valkonen, Jorma Isola, Onni Ylinen, Ville Muhonen, Anna Saxlin, Teemu Tolonen, Matti Nykter, Pekka Ruusuvuori

IEEE Trans. Medical Imaging, 2020

ANHIR: Automatic Non-Rigid Histological Image Registration Challenge.

Jirí Borovec, Jan Kybic, Ignacio Arganda-Carreras, Dmitry V. Sorokin, Gloria Bueno, Alexander V. Khvostikov, Spyridon Bakas, Eric I-Chao Chang, Stefan Heldmann, Kimmo Kartasalo, Leena Latonen, Johannes Lotz, Michelle Noga, Sarthak Pati, Kumaradevan Punithakumar, Pekka Ruusuvuori, Andrzej Skalski, Nazanin Tahmasebi, Masi Valkonen, Ludovic Venet, Yizhe Wang, Nick Weiss, Marek Wodzinski, Yu Xiang, Yan Xu, Yan Yan, Paul A. Yushkevich, Shengyu Zhao, Arrate Muñoz-Barrutia

IEEE Trans. Medical Imaging, 2020

Predicting molecular phenotypes from histopathology images: a transcriptome-wide expression-morphology analysis in breast cancer.

Yinxi Wang, Kimmo Kartasalo, Masi Valkonen, Christer Larsson, Pekka Ruusuvuori, Johan Hartman, Mattias Rantalainen

CoRR, 2020

Detection of Perineural Invasion in Prostate Needle Biopsies with Deep Neural Networks.

Peter Ström, Kimmo Kartasalo, Pekka Ruusuvuori, Henrik Grönberg, Hemamali Samaratunga, Brett Delahunt, Toyonori Tsuzuki, Lars Egevad, Martin Eklund

CoRR, 2020

Virtual reality for 3D histology: multi-scale visualization of organs with interactive feature exploration.

Kaisa Liimatainen, Leena Latonen, Masi Valkonen, Kimmo Kartasalo, Pekka Ruusuvuori

CoRR, 2020

2019

Pathologist-Level Grading of Prostate Biopsies with Artificial Intelligence.

Peter Ström, Kimmo Kartasalo, Henrik Olsson, Leslie Solorzano, Brett Delahunt, Daniel M. Berney, David G. Bostwick, Andrew J. Evans, David J. Grignon, Peter A. Humphrey, Kenneth A. Iczkowski, James G. Kench, Glen Kristiansen, Theodorus H. van der Kwast, Katia R. M. Leite, Jesse K. McKenney, Jon Oxley, Chin-Chen Pan, Hemamali Samaratunga, John R. Srigley, Hiroyuki Takahashi, Toyonori Tsuzuki, Murali Varma, Ming Zhou, Johan Lindberg, Cecilia Bergström, Pekka Ruusuvuori, Carolina Wählby, Henrik Grönberg, Mattias Rantalainen, Lars Egevad, Martin Eklund

CoRR, 2019

Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks.

Kaisa Liimatainen, Lauri Kananen, Leena Latonen, Pekka Ruusuvuori

BMC Bioinform., 2019

3D-Printed Whole Prostate Models with Tumor Hotspots Using Dual-Extruder Printer.

Kaisa Liimatainen, Leena Latonen, Kimmo Kartasalo, Pekka Ruusuvuori

Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

2018

Comparative analysis of tissue reconstruction algorithms for 3D histology.

Kimmo Kartasalo, Leena Latonen, Jorma Vihinen, Tapio Visakorpi, Matti Nykter, Pekka Ruusuvuori

Bioinform., 2018

2017

Dual Structured Convolutional Neural Network with Feature Augmentation for Quantitative Characterization of Tissue Histology.

Mira Valkonen, Kimmo Kartasalo, Kaisa Liimatainen, Matti Nykter, Leena Latonen, Pekka Ruusuvuori

Proceedings of the 2017 IEEE International Conference on Computer Vision Workshops, 2017

2016

Supervised method for cell counting from bright field focus stacks.

Kaisa Liimatainen, Pekka Ruusuvuori, Leena Latonen, Heikki Huttunen

Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Benchmarking of algorithms for 3D tissue reconstruction.

Kimmo Kartasalo, Leena Latonen, Tapio Visakorpi, Matti Nykter, Pekka Ruusuvuori

Proceedings of the 2016 IEEE International Conference on Image Processing, 2016

2015

Data-Driven Approach to Benthic Cover Type Classification Using Bathymetric LiDAR Waveform Analysis.

Teemu Kumpumäki, Pekka Ruusuvuori, Ville Kangasniemi, Tarmo Lipping

Remote. Sens., 2015

Training based cell detection from bright-field microscope images.

Tuomas Tikkanen, Pekka Ruusuvuori, Leena Latonen, Heikki Huttunen

Proceedings of the 9th International Symposium on Image and Signal Processing and Analysis, 2015

2013

Multi-scale Gaussian representation and outline-learning based cell image segmentation.

Muhammad Farhan, Pekka Ruusuvuori, Mario Emmenlauer, Pauli Rämö, Christoph Dehio, Olli Yli-Harja

BMC Bioinform., 2013

The 9th annual MLSP competition: New methods for acoustic classification of multiple simultaneous bird species in a noisy environment.

Forrest Briggs, Yonghong Huang, Raviv Raich, Konstantinos Eftaxias, Zhong Lei, William Cukierski, Sarah Frey Hadley, Adam Hadley, Matthew Betts, Xiaoli Z. Fern, Jed Irvine, Lawrence Neal, Anil Thomas, Gábor Fodor, Grigorios Tsoumakas, Hong Wei Ng, Thi Ngoc Tho Nguyen, Heikki Huttunen, Pekka Ruusuvuori, Tapio Manninen, Aleksandr Diment, Tuomas Virtanen, Julien Marzat, Joseph Defretin, Dave Callender, Chris Hurlburt, Ken Larrey, Maxim Milakov

Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing, 2013

Graph cut and image intensity-based splitting improves nuclei segmentation in high-content screening.

Muhammad Farhan, Pekka Ruusuvuori, Mario Emmenlauer, Pauli Rämö, Olli Yli-Harja, Christoph Dehio

Proceedings of the Image Processing: Algorithms and Systems XI, 2013

2012

The eighth annual MLSP competition: Second place team.

Heikki Huttunen, Timo Erkkilä, Pekka Ruusuvuori, Tapio Manninen

Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing, 2012

Application independent greedy particle tracking method for 3D fluorescence microscopy image series.

Lassi Paavolainen, Pasi Kankaanpää, Pekka Ruusuvuori, Gregory McNerney, Mikko Karjalainen, Varpu Marjomaki

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Image segmentation using sparse logistic regression with spatial prior.

Pekka Ruusuvuori, Tapio Manninen, Heikki Huttunen

Proceedings of the 20th European Signal Processing Conference, 2012

Polynomial pulp fiber modeling.

Heikki Huttunen, Hannu Oinonen, Jyrki Selinummi, Pekka Ruusuvuori, Ville Voipio

Proceedings of the 20th European Signal Processing Conference, 2012

2010

Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images.

Pekka Ruusuvuori, Tarmo Äijö, Sharif Chowdhury, Cecilia Garmendia-Torres, Jyrki Selinummi, Mirko Birbaumer, Aimée M. Dudley, Lucas Pelkmans, Olli Yli-Harja

BMC Bioinform., 2010

Probabilistic analysis of gene expression measurements from heterogeneous tissues.

Timo Erkkilä, Saara Lehmusvaara, Pekka Ruusuvuori, Tapio Visakorpi, Ilya Shmulevich, Harri Lähdesmäki

Bioinform., 2010

Identity verification based on vessel matching from fundus images.

Hannu Oinonen, Heikki Forsvik, Pekka Ruusuvuori, Olli Yli-Harja, Ville Voipio, Heikki Huttunen

Proceedings of the International Conference on Image Processing, 2010

2008

Synthetic Images of High-Throughput Microscopy for Validation of Image Analysis Methods.

Antti Lehmussola, Pekka Ruusuvuori, Jyrki Selinummi, Tiina Rajala, Olli Yli-Harja

Proc. IEEE, 2008

Efficient automated method for image-based classification of microbial cells.

Pekka Ruusuvuori, Jenni Seppälä, Timo Erkkilä, Antti Lehmussola, Jaakko A. Puhakka, Olli Yli-Harja

Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008

Object detection for dynamic adaptation of interconnections in inkjet printed electronics.

Heikki Huttunen, Pekka Ruusuvuori, Tapio Manninen, Kalle Rutanen, Risto Rönkkä, Ari Visa

Proceedings of the International Conference on Image Processing, 2008

Benchmark set of synthetic images for validating cell image analysis algorithms.

Pekka Ruusuvuori, Antti Lehmussola, Jyrki Selinummi, Tiina Rajala, Heikki Huttunen, Olli Yli-Harja

Proceedings of the 2008 16th European Signal Processing Conference, 2008

2007

Computational Framework for Simulating Fluorescence Microscope Images With Cell Populations.

Antti Lehmussola, Pekka Ruusuvuori, Jyrki Selinummi, Heikki Huttunen, Olli Yli-Harja

IEEE Trans. Medical Imaging, 2007

Computational Methods for Estimation of Cell Cycle Phase Distributions of Yeast Cells.

Antti Niemistö, Matti Nykter, Tommi Aho, Henna Jalovaara, Kalle Marjanen, Miika Ahdesmäki, Pekka Ruusuvuori, Mikko Tiainen, Marja-Leena Linne, Olli Yli-Harja

EURASIP J. Bioinform. Syst. Biol., 2007

2006

Simulation of microarray data with realistic characteristics.

Matti Nykter, Tommi Aho, Miika Ahdesmäki, Pekka Ruusuvuori, Antti Lehmussola, Olli Yli-Harja

BMC Bioinform., 2006

Evaluating the performance of microarray segmentation algorithms.

Antti Lehmussola, Pekka Ruusuvuori, Olli Yli-Harja

Bioinform., 2006

Learning-based method for spot addressing in microarray images.

Pekka Ruusuvuori, Antti Lehmussola, Olli Yli-Harja

Proceedings of the Image Processing: Algorithms and Systems IV, 2006

Three-Dimensional Digital Image Analysis of Immunostained Neurons in Thick Tissue Sections.

Jyrki Selinummi, Pekka Ruusuvuori, Antti Lehmussola, Heikki Huttunen, Olli Yli-Harja, Riitta Miettinen

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005

Exploring subjective image quality through isopreference curves.

Antti Lehmussola, Pekka Ruusuvuori, Olli Yli-Harja

Proceedings of the 2005 International Conference on Image Processing, 2005