Peichen Pan

According to our database, Peichen Pan authored at least 46 papers between 1992 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

ADMET evaluation in drug discovery: 21. Application and industrial validation of machine learning algorithms for Caco-2 permeability prediction.

Dong Wang, Jieyu Jin, Guqin Shi, Jingxiao Bao, Zheng Wang, Shimeng Li, Peichen Pan, Dan Li, Yu Kang, Tingjun Hou

J. Cheminformatics, December, 2025

Deep Learning-Driven Insights into Enzyme-Substrate Interaction Discovery.

Wenjia Qian, Xiaorui Wang, Yuansheng Huang, Yu Kang, Peichen Pan, Chang-Yu Hsieh, Tingjun Hou

J. Chem. Inf. Model., 2025

2024

A general model for predicting enzyme functions based on enzymatic reactions.

Wenjia Qian, Xiaorui Wang, Yu Kang, Peichen Pan, Tingjun Hou, Chang-Yu Hsieh

J. Cheminformatics, December, 2024

Genetic Algorithm-Based Receptor Ligand: A Genetic Algorithm-Guided Generative Model to Boost the Novelty and Drug-Likeness of Molecules in a Sampling Chemical Space.

Mingyang Wang, Zhengjian Wu, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Xiaojun Yao, Zhitong Bing, Chang-Yu Hsieh, Tingjun Hou

J. Chem. Inf. Model., February, 2024

Dissecting the role of ALK double mutations in drug resistance to lorlatinib with in-depth theoretical modeling and analysis.

Xing Zhang, Jianbo Tong, Tianhao Wang, Tianyue Wang, Lei Xu, Zhe Wang, Tingjun Hou, Peichen Pan

Comput. Biol. Medicine, February, 2024

Deep Lead Optimization: Leveraging Generative AI for Structural Modification.

Odin Zhang, Haitao Lin, Hui Zhang, Huifeng Zhao, Yufei Huang, Yuansheng Huang, Dejun Jiang, Chang-Yu Hsieh, Peichen Pan, Tingjun Hou

CoRR, 2024

Deep Geometry Handling and Fragment-wise Molecular 3D Graph Generation.

Odin Zhang, Yufei Huang, Shichen Cheng, Mengyao Yu, Xujun Zhang, Haitao Lin, Yundian Zeng, Mingyang Wang, Zhenxing Wu, Huifeng Zhao, Zaixi Zhang, Chenqing Hua, Yu Kang, Sunliang Cui, Peichen Pan, Chang-Yu Hsieh, Tingjun Hou

CoRR, 2024

In-depth theoretical modeling to explore the mechanism of TPX-0131 overcoming lorlatinib resistance to ALKL1196M/G1202R mutation.

Xing Zhang, Jianbo Tong, Tianhao Wang, Zhe Wang, Shukai Gu, Lei Xu, Tingjun Hou, Peichen Pan

Comput. Biol. Medicine, 2024

Structure-based virtual screening of novel USP5 inhibitors targeting the zinc finger ubiquitin-binding domain.

Tianhao Wang, Jianbo Tong, Xing Zhang, Zhe Wang, Lei Xu, Peichen Pan, Tingjun Hou

Comput. Biol. Medicine, 2024

2023

TB-IECS: an accurate machine learning-based scoring function for virtual screening.

Xujun Zhang, Chao Shen, Dejun Jiang, Jintu Zhang, Qing Ye, Lei Xu, Tingjun Hou, Peichen Pan, Yu Kang

J. Cheminformatics, December, 2023

Small-Molecule Conformer Generators: Evaluation of Traditional Methods and AI Models on High-Quality Data Sets.

Zhe Wang, Haiyang Zhong, Jintu Zhang, Peichen Pan, Dong Wang, Huanxiang Liu, Xiaojun Yao, Tingjun Hou, Yu Kang

J. Chem. Inf. Model., November, 2023

ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functions.

Xujun Zhang, Chao Shen, Tianyue Wang, Yafeng Deng, Yu Kang, Dan Li, Tingjun Hou, Peichen Pan

Briefings Bioinform., September, 2023

Efficient and accurate large library ligand docking with KarmaDock.

Xujun Zhang, Odin Zhang, Chao Shen, Wanglin Qu, Shicheng Chen, Hanqun Cao, Yu Kang, Zhe Wang, Ercheng Wang, Jintu Zhang, Yafeng Deng, Furui Liu, Tianyue Wang, Hongyan Du, Langcheng Wang, Peichen Pan, Guangyong Chen, Chang-Yu Hsieh, Tingjun Hou

Nat. Comput. Sci., 2023

Learning on topological surface and geometric structure for 3D molecular generation.

Odin Zhang, Tianyue Wang, Gaoqi Weng, Dejun Jiang, Ning Wang, Xiaorui Wang, Huifeng Zhao, Jialu Wu, Ercheng Wang, Guangyong Chen, Yafeng Deng, Peichen Pan, Yu Kang, Chang-Yu Hsieh, Tingjun Hou

Nat. Comput. Sci., 2023

2022

FPGA HLS Today: Successes, Challenges, and Opportunities.

Jason Cong, Jason Lau, Gai Liu, Stephen Neuendorffer, Peichen Pan, Kees A. Vissers, Zhiru Zhang

ACM Trans. Reconfigurable Technol. Syst., 2022

VGSC-DB: an online database of voltage-gated sodium channels.

Gaoang Wang, Jiahui Yu, Hongyan Du, Chao Shen, Xujun Zhang, Yifei Liu, Yangyang Zhang, Dong-Sheng Cao, Peichen Pan, Tingjun Hou

J. Cheminformatics, 2022

ReMODE: a deep learning-based web server for target-specific drug design.

Mingyang Wang, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Honglin Li, Chang-Yu Hsieh, Tingjun Hou

J. Cheminformatics, 2022

2019

Caffeine: Toward Uniformed Representation and Acceleration for Deep Convolutional Neural Networks.

Chen Zhang, Guangyu Sun, Zhenman Fang, Peipei Zhou, Peichen Pan, Jason Cong

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2019

2017

Comparative analyses of structural features and scaffold diversity for purchasable compound libraries.

Jun Shang, Huiyong Sun, Hui Liu, Fu Chen, Sheng Tian, Peichen Pan, Dan Li, De-Xin Kong, Tingjun Hou

J. Cheminformatics, 2017

2016

Sequential Circuit Technology Mapping.

Peichen Pan

Encyclopedia of Algorithms, 2016

Software Infrastructure for Enabling FPGA-Based Accelerations in Data Centers: Invited Paper.

Jason Cong, Muhuan Huang, Peichen Pan, Di Wu, Peng Zhang

Proceedings of the 2016 International Symposium on Low Power Electronics and Design, 2016

Caffeine: towards uniformed representation and acceleration for deep convolutional neural networks.

Chen Zhang, Zhenman Fang, Peipei Zhou, Peichen Pan, Jason Cong

Proceedings of the 35th International Conference on Computer-Aided Design, 2016

Source-to-Source Optimization for HLS.

Jason Cong, Muhuan Huang, Peichen Pan, Yuxin Wang, Peng Zhang

Proceedings of the FPGAs for Software Programmers, 2016

2015

Identification and Preliminary SAR Analysis of Novel Type-I Inhibitors of TIE-2 via Structure-Based Virtual Screening and Biological Evaluation in in vitro Models.

Peichen Pan, Sheng Tian, Huiyong Sun, Xiaotian Kong, Wenfang Zhou, Dan Li, Youyong Li, Tingjun Hou

J. Chem. Inf. Model., 2015

2014

Assessing an Ensemble Docking-Based Virtual Screening Strategy for Kinase Targets by Considering Protein Flexibility.

Sheng Tian, Huiyong Sun, Peichen Pan, Dan Li, Xuechu Zhen, Youyong Li, Tingjun Hou

J. Chem. Inf. Model., 2014

2013

Development and Evaluation of an Integrated Virtual Screening Strategy by Combining Molecular Docking and Pharmacophore Searching Based on Multiple Protein Structures.

Sheng Tian, Huiyong Sun, Youyong Li, Peichen Pan, Dan Li, Tingjun Hou

J. Chem. Inf. Model., 2013

Molecular Principle of Topotecan Resistance by Topoisomerase I Mutations through Molecular Modeling Approaches.

Peichen Pan, Youyong Li, Huidong Yu, Huiyong Sun, Tingjun Hou

J. Chem. Inf. Model., 2013

2008

Sequential Circuit Technology Mapping.

Peichen Pan

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

2006

FPGA Design Automation: A Survey.

Deming Chen, Jason Cong, Peichen Pan

Found. Trends Electron. Des. Autom., 2006

2002

Monotone bipartitioning problem in a planar point set with applications to VLSI.

Parthasarathi Dasgupta, Peichen Pan, Subhas C. Nandy, Bhargab B. Bhattacharya

ACM Trans. Design Autom. Electr. Syst., 2002

1999

Partial Scan with Preselected Scan Signals.

Peichen Pan, C. L. Liu

IEEE Trans. Computers, 1999

The Retiming of Single-Phase Clocked Circuits Containing Level-Sensitive Latches.

Prashant Saxena, Peichen Pan, C. L. Liu

Proceedings of the 12th International Conference on VLSI Design (VLSI Design 1999), 1999

Optimal Retiming for Initial State Computation.

Peichen Pan, Guohua Chen

Proceedings of the 12th International Conference on VLSI Design (VLSI Design 1999), 1999

Performance-Driven Integration of Retiming and Resynthesis.

Peichen Pan

Proceedings of the 36th Conference on Design Automation, 1999

1998

Optimal clock period FPGA technology mapping for sequential circuits.

Peichen Pan, C. L. Liu

ACM Trans. Design Autom. Electr. Syst., 1998

Optimal clock period clustering for sequential circuits with retiming.

Peichen Pan, Arvind K. Karandikar, C. L. Liu

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1998

Low power logic synthesis under a general delay model.

Unni Narayanan, Peichen Pan, C. L. Liu

Proceedings of the 1998 International Symposium on Low Power Electronics and Design, 1998

A New Retiming-Based Technology Mapping Algorithm for LUT-based FPGAs.

Peichen Pan, Chih-Chang Lin

Proceedings of the 1998 ACM/SIGDA Sixth International Symposium on Field Programmable Gate Arrays, 1998

1997

Optimal Graph Constraint Reduction for Symbolic Layout Compaction.

Peichen Pan, Sai-keung Dong, C. L. Liu

Algorithmica, 1997

Continuous Retiming: Algorithms and Applications.

Peichen Pan

Proceedings of the Proceedings 1997 International Conference on Computer Design: VLSI in Computers & Processors, 1997

1996

Area Minimization for Hierarchical Floorplans.

Peichen Pan, Weiping Shi, C. L. Liu

Algorithmica, 1996

Technology Mapping of Sequential Circuits for LUT-Based FPGAs for Performance.

Peichen Pan, C. L. Liu

Proceedings of the 1996 Fourth International Symposium on Field Programmable Gate Arrays, 1996

Desensitization for Power Reduction in Sequential Circuits.

Xiangfeng Chen, Peichen Pan, C. L. Liu

Proceedings of the 33st Conference on Design Automation, 1996

1995

Area minimization for floorplans.

Peichen Pan, C. L. Liu

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1995

Partial Scan with Pre-selected Scan Signals.

Peichen Pan, C. L. Liu

Proceedings of the 32st Conference on Design Automation, 1995

1992

Area minimization for general floorplans.

Peichen Pan, C. L. Liu

Proceedings of the 1992 IEEE/ACM International Conference on Computer-Aided Design, 1992